Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30103
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    31   0.21 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    29   0.86 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.0  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    27   2.0  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   4.6  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   6.0  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   6.0  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   8.0  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 70  VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR 201
           +E G+ + W  + K  H   Y    V+PE    +L+  PLNP+  R
Sbjct: 71  IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNR 116


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 22/76 (28%), Positives = 37/76 (48%)
 Frame = +1

Query: 208  TDIMMAAYELAQLNKVKSGRSVKEVLYKNKISSKLKNEGHSNEQNVGFEIRGMQEKIDQA 387
            T+I+ A   L QLN+  S   +        +S+K K      + N+G E+R +  KI+  
Sbjct: 933  TEILEANEYLHQLNEWNSELRID-------VSTKFKCI-KEKKSNIGEEVRIIASKIEST 984

Query: 388  TFNLKKIDQEMRHLNT 435
              NL+K+ + +  L T
Sbjct: 985  DDNLRKLQERLADLRT 1000


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = +1

Query: 241  QLNKVKSGRSVKEVLYKNKISSKLKNEGHSNEQNVGFEIRGMQEKIDQATFNLKKIDQEM 420
            ++ + KS    K++  + +  S LK E  S  Q     I  ++ K+D+      K++ ++
Sbjct: 937  KIEESKSSDLGKKLTARQEEISNLKEENMSQSQ----AITSVKSKLDETLSKSSKLEADI 992

Query: 421  RHLNTLLMEQQNFFQSLFKSTE 486
             HL   + E +    +L  S E
Sbjct: 993  EHLKNKVSEVEVERNALLASNE 1014


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 175 KPLNPREKRLPTDIMMAAYELAQLNKVKSG-RSVKEVLYKNKISSKLKNEGHSNEQ 339
           K LN  + ++P DI     E+A+     SG  S K+ L  N   + L N G+SN++
Sbjct: 332 KELNLMDPKVPEDIFKTHLEVARTGLGASGVYSAKQNL-ANTFVNALVNAGYSNDR 386


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 232 ELAQLNKVKSGRSVKEVLYKNKISSKLK--NEGHSNEQNVGFEIRGMQEKIDQAT 390
           EL +  + +S RSV E   K    S  +  NE   +E+  G+     +EK++Q +
Sbjct: 155 ELKKRRQERSARSVSERTRKRSPVSDYEEQNESEKSEEEEGYSPSYAEEKVEQVS 209


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = +1

Query: 307 KLKNEGHSNEQNVGFEIRG---MQEKIDQATFNLKKIDQEMRHLNTLLMEQQ 453
           +L +  +S+E+ V F   G   + E ID+   N++++  ++  +NTL+ + +
Sbjct: 603 ELDDPTYSDEEEVLFAPPGDLQLSESIDELNNNIEELKAQLNAINTLIKKAE 654


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 501 FVRNQFCALEEALKEIL-LFH*KSIQMSHLLVYFLQVKRRLVNLLLHSS 358
           FV   F + EE L  +  L H  S + SH ++   ++ + L +L LH+S
Sbjct: 600 FVVPHFASAEELLHSLSHLLHHPSTKRSHKMLEGKELSQELEDLSLHNS 648


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = -2

Query: 368 CIPR-ISKPTFCSLLCPSFFNFEEILFLYSTSLTDRPDLTLFSWAN----S*AAIIMSVG 204
           C P  ISK T  + +        E L L   +  +R D ++F+WAN    S   + M VG
Sbjct: 809 CEPTTISKATAANYIMTHLIKNPEELDLILVAGNNRTDESVFAWANKSKVSSFTVSMGVG 868

Query: 203 N 201
           N
Sbjct: 869 N 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,090
Number of Sequences: 5004
Number of extensions: 59963
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)