Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30103
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              25   0.70 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.6  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 28  GLSKLVRQTKLILFVEMGMFSAWLPKCLHKY 120
           G++KL+ +   I   ++ + SA L KC+ KY
Sbjct: 96  GVNKLITECSAISDADLAVKSAKLLKCIGKY 126


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 437 F*WNSKISFKASSRAQNWFRTN 502
           F W+  +S   SS +  W R N
Sbjct: 420 FQWDDSVSAGFSSSSNTWLRVN 441


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 437 F*WNSKISFKASSRAQNWFRTN 502
           F W+  +S   SS +  W R N
Sbjct: 420 FQWDDSVSAGFSSSSNTWLRVN 441


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 703 ARCTWTFKSYN 671
           ++CTWT  SY+
Sbjct: 68  SKCTWTITSYH 78


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 405 NRPGDETFEYSFNGTAKFLSKPLQEHRI 488
           +RP D+  +  F GT K L K +    I
Sbjct: 270 HRPIDDNIDDEFKGTYKTLYKQMWSQNI 297


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 211 LLVIVFLLDSTVSRLI*LCRPQEIL 137
           L +IVF L + ++ ++ LCR   I+
Sbjct: 435 LCLIVFTLFTVLATIVILCRAPHII 459


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 211 LLVIVFLLDSTVSRLI*LCRPQEIL 137
           L +IVF L + ++ ++ LCR   I+
Sbjct: 435 LCLIVFTLFTVLATIVILCRAPHII 459


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 211 LLVIVFLLDSTVSRLI*LCRPQEIL 137
           L +IVF L + ++ ++ LCR   I+
Sbjct: 435 LCLIVFTLFTVLATIVILCRAPHII 459


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 211 LLVIVFLLDSTVSRLI*LCRPQEIL 137
           L +IVF L + ++ ++ LCR   I+
Sbjct: 435 LCLIVFTLFTVLATIVILCRAPHII 459


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 211 LLVIVFLLDSTVSRLI*LCRPQEIL 137
           L +IVF L + ++ ++ LCR   I+
Sbjct: 435 LCLIVFTLFTVLATIVILCRAPHII 459


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 211 LLVIVFLLDSTVSRLI*LCRPQEIL 137
           L +IVF L + ++ ++ LCR   I+
Sbjct: 435 LCLIVFTLFTVLATIVILCRAPHII 459


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 211 LLVIVFLLDSTVSRLI*LCRPQEIL 137
           L +IVF L + ++ ++ LCR   I+
Sbjct: 503 LCLIVFTLFTVLATIVILCRAPHII 527


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 211 LLVIVFLLDSTVSRLI*LCRPQEIL 137
           L +IVF L + ++ ++ LCR   I+
Sbjct: 503 LCLIVFTLFTVLATIVILCRAPHII 527


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/42 (23%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 96  AAEMPTQIC--LQNSFSIS*GRQSHIKRETVESKRKTITNRH 215
           +A +P+ +   +++ F    GRQ++ + +T+E +++   NR+
Sbjct: 253 SANLPSPLYPWMRSQFERKRGRQTYTRYQTLELEKEFHYNRY 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,358
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)