Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30103
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 34 0.080
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 34 0.11
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 33 0.14
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 33 0.14
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 33 0.14
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 33 0.24
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 33 0.24
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 32 0.32
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 32 0.32
At3g07190.1 68416.m00857 expressed protein 32 0.43
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 32 0.43
At5g64180.1 68418.m08058 expressed protein 31 0.98
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 31 0.98
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 31 0.98
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 31 0.98
At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domai... 30 1.3
At1g77720.1 68414.m09049 protein kinase family protein contains ... 29 2.3
At2g38100.1 68415.m04677 proton-dependent oligopeptide transport... 29 4.0
At5g27060.1 68418.m03229 disease resistance family protein conta... 28 5.2
At5g24770.1 68418.m02924 vegetative storage protein 2 (VSP2) ide... 28 5.2
At3g58240.1 68416.m06493 meprin and TRAF homology domain-contain... 28 5.2
At2g22030.1 68415.m02615 kelch repeat-containing F-box family pr... 28 5.2
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 28 6.9
At3g48500.1 68416.m05294 expressed protein 28 6.9
At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase fa... 28 6.9
At2g28080.1 68415.m03410 glycosyltransferase family protein cont... 28 6.9
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 28 6.9
At1g52990.1 68414.m05997 thioredoxin family protein similar to S... 28 6.9
At5g24780.1 68418.m02926 vegetative storage protein 1 (VSP1) ide... 27 9.2
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 34.3 bits (75), Expect = 0.080
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAYEL 237
+E G+ S W + K H Y V+PE V+L+ PLNP+ R T IM + +
Sbjct: 73 IEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAY 231
+E G+ S W + K H Y V+PE V+L+ PLNP+ R T IM +
Sbjct: 73 IEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAY 231
+E G+ S W + K H Y ++PE V+L+ PLNP+ R T IM +
Sbjct: 73 IEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAY 231
+E G+ S W + K H Y ++PE V+L+ PLNP+ R T IM +
Sbjct: 73 IEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAY 231
+E G+ S W + K H Y ++PE V+L+ PLNP+ R T IM +
Sbjct: 73 IEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAY 231
+E G+ + W + K H Y V+PE V+L+ PLNP+ R T IM +
Sbjct: 73 IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAY 231
+E G+ + W + K H Y V+PE V+L+ PLNP+ R T IM +
Sbjct: 73 IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAY 231
+E G+ + W + K H Y V+PE ++L+ PLNP+ R T IM +
Sbjct: 73 IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETF 129
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAY 231
+E G+ + W + K H Y V+PE ++L+ PLNP+ R T IM +
Sbjct: 73 IEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETF 129
>At3g07190.1 68416.m00857 expressed protein
Length = 220
Score = 31.9 bits (69), Expect = 0.43
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 247 NKVKSGRSVKEVLYKNKISSKLKNEGHSNEQNVGFEIRGMQEKIDQATFNLKKIDQEMRH 426
+ V S + E L K +I K K E S E I+ ++EK+ + NLKK+++E +
Sbjct: 120 SNVGSSKGELEELRKERIELKEKEEKTSKE------IKQLKEKLSCVSENLKKLEKESKE 173
Query: 427 LNTLLMEQQNFFQSLFK-STELV 492
T L + +L K S+EL+
Sbjct: 174 KETKLETAEAHVTALQKQSSELL 196
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 31.9 bits (69), Expect = 0.43
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAY 231
+E G+ S W + K H Y + PE ++L+ PLNP+ R T IM ++
Sbjct: 74 IEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQIMFESF 130
>At5g64180.1 68418.m08058 expressed protein
Length = 158
Score = 30.7 bits (66), Expect = 0.98
Identities = 22/95 (23%), Positives = 50/95 (52%)
Frame = +1
Query: 127 RTALVSPEAGKVILSVKPLNPREKRLPTDIMMAAYELAQLNKVKSGRSVKEVLYKNKISS 306
R +LVS +A + + + + E+ L I AA+ ++ + +S + E ++ ++
Sbjct: 47 RASLVSEQARTIKVLEQRVQTLERELDAAITAAAHARSEKRQAESSQKAAESRAQD-VTK 105
Query: 307 KLKNEGHSNEQNVGFEIRGMQEKIDQATFNLKKID 411
+L+N + ++ E+RGMQE+I + +K ++
Sbjct: 106 ELENTTKVFKLHME-ELRGMQEQISKRDNEIKLLE 139
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 30.7 bits (66), Expect = 0.98
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +1
Query: 16 RKTAGLSKLVRQTKLILFVEMGMFSAWLPKCLHKYVYRTALVSPEAGKVILS 171
RK G +L ++T++I V+M F + LP LH+ + V+ E G ILS
Sbjct: 712 RKAGGRKELEKETQVI--VDMREFMSSLPNVLHQKGMKIIPVTLEVGDYILS 761
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPR-EKRLPTDIMMAAYELA 240
+E G+ S W + K + Y V+PE V+L+ PLNP+ ++ T IM + +
Sbjct: 28 MEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPLNPKADREKMTQIMFETFAVP 87
Query: 241 QL 246
+
Sbjct: 88 SM 89
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +1
Query: 70 VEMGMFSAW--LPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKR-LPTDIMMAAYEL 237
+E G+ + W + K H Y V PE V+L+ P NP+ R T IM ++++
Sbjct: 62 MEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNPKANREKMTQIMFESFDV 120
>At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 623
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 130 TALVSPEAGKVILSVKPLNPREKRLPTDIMMAAYELAQLNKVKSGRSVKEVLYK 291
T + +V+ VK PRE+++P+ M AY L + +VKE Y+
Sbjct: 148 TVTEASSPSEVVPPVKRRRPRERKVPSTPMARAYGFFNLGAALAWGAVKESTYR 201
>At1g77720.1 68414.m09049 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 777
Score = 29.5 bits (63), Expect = 2.3
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Frame = +1
Query: 79 GMFSAWLPKCLHKYVYRTALVSPEAGKVILSVKPLNPREKRLPTDIMMAAY-ELAQ-LNK 252
G +A LP+ LH V S + KV S P PR++ D+ +L Q L K
Sbjct: 346 GQANARLPEELHTSVSSQPQKSDKHEKVASSKGPSAPRKRNYDPDLFFKVNGKLYQRLGK 405
Query: 253 VKSGRS--VKEVLYKN---KISSKLKNEGHSNEQNVGF-EIRGMQEKIDQATFNLKKIDQ 414
+ SG S V +V+ + K+K +G GF + G +K+ T ++ ID
Sbjct: 406 IGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIGYLKKLKGKTNIIQLIDY 465
Query: 415 EMRHLNTLLMEQQN 456
E+ TLL E N
Sbjct: 466 EVTD-KTLLQEVLN 478
>At2g38100.1 68415.m04677 proton-dependent oligopeptide transport
(POT) family protein low similarity to SP|P46032 Peptide
transporter PTR2-B (Histidine transporting protein)
{Arabidopsis thaliana}; contains Pfam profile PF00854:
POT family
Length = 521
Score = 28.7 bits (61), Expect = 4.0
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 250 KVKSGRSVKEVLYKNKISSKLKNE-GHSNEQNVGFEIRGMQEKIDQATFNLKKIDQEMRH 426
+VK G S +++ ++S K +SN + +E + I T +L+ +D+
Sbjct: 188 RVKPGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAECDQDIKPHTSSLRYLDRAAMI 247
Query: 427 LNTLLMEQQNFFQ-SLFKSTELVPYKSQHASTPVYSDSPI 543
L T +EQQ + L + TE+ KS + P+++ S I
Sbjct: 248 LQTESLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLI 287
>At5g27060.1 68418.m03229 disease resistance family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 957
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 367 QEKIDQATFNLKK--IDQEMRHLNTLLMEQQNFFQSLFKSTELVPYKSQHAS 516
Q +D + F+ K +D + HLNT N+F S FK L+ H S
Sbjct: 423 QGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVS 474
>At5g24770.1 68418.m02924 vegetative storage protein 2 (VSP2)
identical to SP|O82122 Vegetative storage protein 2
precursor {Arabidopsis thaliana}; contains Pfam profile
PF03767: HAD superfamily (subfamily IIIB) phosphatase
Length = 265
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 259 SGRSVKEVLYKNKISSKLKNEGHSNEQNVGFEIRGMQEKIDQATFNL 399
+G ++++V+YK+K+ L +G++ N+G + + E F L
Sbjct: 210 NGSNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPGRVFKL 256
>At3g58240.1 68416.m06493 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 317
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +1
Query: 337 QNVGFEIRGMQEKIDQATFNLKKIDQEMRHLNTLLMEQQNFFQSLFKSTELVPYKSQHAS 516
+N+GF++ +++K+D+ +KK + + + L + N ++ K E + ++AS
Sbjct: 249 KNLGFKLDWLEKKLDEVK-EIKKKCERVTEMEKELHDLMNKHTNVSKLLEKEKLEIKNAS 307
Query: 517 TPVYSDSPII 546
P S S +I
Sbjct: 308 APDLSFSDVI 317
>At2g22030.1 68415.m02615 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 383
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 574 NCLVYSYYFNQGIMWF 621
N ++Y YY N G+MW+
Sbjct: 274 NSVIYVYYINLGVMWY 289
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +1
Query: 247 NKVKSGRSVKEVLYKNKISSKLKNEGHSNEQNVGFEIRGMQEKIDQATFNLKKIDQEMRH 426
N +S S E ++KI+ + ++ QN +K D+A+F L+ I+ +
Sbjct: 32 NSCRSKHSETEQRRRSKINERFQSLMDIIPQNQN------DQKRDKASFLLEVIEY-IHF 84
Query: 427 LNTLLMEQQNFFQSLFKS-TELVPYKSQHASTPVYSDSPII 546
L + ++ Q ++S T+L+P+++ H S +D P I
Sbjct: 85 LQEKVHMYEDSHQMWYQSPTKLIPWRNSHGSVAEENDHPQI 125
>At3g48500.1 68416.m05294 expressed protein
Length = 668
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +1
Query: 223 AAYELAQLNKVKSGRSVKEVLYKNKISSKLKNEGHSNEQNVGFEIRGMQEKIDQATFNLK 402
A Y+ +L KV SVKE+ + + L H N+ + + RG KID+ N++
Sbjct: 450 AYYKKTKLPKVILKTSVKEL----DLEAALTERQHHNKLMMEAKARGEGYKIDKLRRNIE 505
Query: 403 KIDQEMRHLNTLLMEQQNFFQSL 471
+ + H L E++ + +
Sbjct: 506 MDEYDFLHWRRSLEEREALLRDI 528
>At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1243
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +1
Query: 31 LSKLVRQTKLILFVEMGMFSAWLPKCLHKYVYRTALVSPEAGKVILSVKPLNPREK 198
L+K++R T + +LPKCL++ +R A ILSV PL+P K
Sbjct: 52 LAKVLRYTSNYVSTTRYNLITFLPKCLYEQFHRVANFYFLVA-AILSVFPLSPFNK 106
>At2g28080.1 68415.m03410 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 482
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 244 LNKVKSGRSVKEV-LYKNKISSKLKNEGHSNEQNVGFEIRGMQEKI 378
+N++ G S +++ K + ++N G S+E N+G I G+ K+
Sbjct: 430 INRLMCGVSKEKIGRVKMSLEGAVRNSGSSSEMNLGLFIDGLLSKV 475
>At2g27170.1 68415.m06029 structural maintenance of chromosomes (SMC)
family protein similar to basement membrane-associated
chondroitin proteoglycan Bamacan [Rattus norvegicus]
GI:1785540; contains Pfam profile PF02463: RecF/RecN/SMC
N terminal domain. No suitalble start codon was
identified.
Length = 1207
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 352 EIRGMQEKIDQATFNLKKIDQEMRHLNTLLMEQQNFFQSLFKSTE 486
E++ + + ID+ T +KKI E L TL + + Q L K E
Sbjct: 872 ELKSVCDSIDEKTKQIKKIKDEKAKLKTLEDDCKGTLQDLDKKLE 916
>At1g52990.1 68414.m05997 thioredoxin family protein similar to
SP|P48384 Thioredoxin M-type, chloroplast precursor
(TRX-M) {Pisum sativum}; contains Pfam profile PF00085:
Thioredoxin
Length = 313
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 398 KLNVAWSIFSCIPRISKPTFCSLLCPSFFNFEE 300
K + WS+F+C P P S+L NF +
Sbjct: 174 KSSTQWSLFNCCPHFLYPIVLSILGQPHLNFAD 206
>At5g24780.1 68418.m02926 vegetative storage protein 1 (VSP1)
identical to SP|O49195 Vegetative storage protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF03767: HAD superfamily (subfamily IIIB) phosphatase
Length = 270
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = +1
Query: 67 FVEMGMFSAWLPKCLHKYVYRTAL-VSPEAGKVILSVKPLNPREKRLPTDIMMAAYELAQ 243
++E G + LP+ LH Y L + P +I+S + E + + +
Sbjct: 154 WLESGESTPGLPETLHLYENLLELGIEP----IIISDRWKKLSEVTVENLKAVGVTKWKH 209
Query: 244 LNKVKSGRSVKEVLYKNKISSKLKNEGHSNEQNVGFEIRGMQEKIDQATFNL 399
L +G + +V+YK+K+ + L +G++ N+G + + E F L
Sbjct: 210 LILKPNGSKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPGRVFKL 261
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,478
Number of Sequences: 28952
Number of extensions: 304435
Number of successful extensions: 834
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -