Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30100
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.30 
SPBC30D10.04 |swi3||replication fork protection complex subunit ...    27   2.1  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.6  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 355 NWNCKFVHYYDCILYFYKHKFRQDYSKKNINKDKQFLIYSQFDNRRQEQ 209
           NW C  +  +   ++     FR+ Y   NI   K   +YS  ++ +Q +
Sbjct: 188 NWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236


>SPBC30D10.04 |swi3||replication fork protection complex subunit
           Swi3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -3

Query: 465 WINSTPVAGGAMANASLFT-----ETFNLTRGPAVVE 370
           WIN   V  G+ +NASLFT        NLT G   V+
Sbjct: 128 WINEIAVENGSDSNASLFTGPSSNSLVNLTSGDPYVQ 164


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 324 IVFYTSISTNFAKTTVKKILTKTNNF*SILNLT 226
           IV+Y  IS ++A +  ++I+  ++N  SILN T
Sbjct: 11  IVYYFIISFSYAFSIKQEIIVSSHNASSILNTT 43


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 283 YSKKNINKDKQFLIYSQFDNRRQEQK 206
           + KK    D+QFL Y   DN R E K
Sbjct: 200 FKKKKNWSDEQFLQYVWSDNHRDEMK 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,206
Number of Sequences: 5004
Number of extensions: 64378
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)