Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30100
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)             30   2.3  
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)                  29   3.0  
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)                   29   3.0  
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_26687| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)             29   4.0  
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)            29   5.2  
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   5.2  
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_133| Best HMM Match : Sushi (HMM E-Value=5e-40)                     29   5.2  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     28   9.1  
SB_1934| Best HMM Match : CHB_HEX_C (HMM E-Value=8.5)                  28   9.1  
SB_49942| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)                    28   9.1  

>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
          Length = 443

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 427 CHRTARHRSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
           C       +R +    + LHS+ + F  SF PR I  W+ LP
Sbjct: 254 CVDPTNRSTRRHSLSFQQLHSNILSFNYSFFPRAIRAWNLLP 295


>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
          Length = 447

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 353 ISYSRISTTAGPLVKLNVSVNRDAFAIAP-PATGVELIHTTWNCYIRPQCVFRDLFC 520
           IS+    T   P+  L+ S+++      P P TG+ +  TTW+   RPQ    D+ C
Sbjct: 9   ISFPADGTFTQPMCLLSASLDKSLVIWQPDPDTGIWIETTTWHEIGRPQVHGYDMQC 65


>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
          Length = 243

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 448 RSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
           RSR N      + S+ +    SF PRTI  W+ LP
Sbjct: 177 RSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 211


>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 436 TARHRSR---VNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
           T+R+ +R    N Y L   H+    ++ S+ PRT+ LW+ LP
Sbjct: 225 TSRYNTRNYHSNNYRLFFTHNQNY-YRNSYFPRTVKLWNSLP 265


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 202 QTFVLDVCCQIENRLKIVCLC*YFFYC 282
           +TF++ + C +ENRLK +C    +F C
Sbjct: 147 KTFLIYLFCAVENRLKFMCETDEYFPC 173


>SB_26687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 211 VLDVCCQIENRLKIVCLC*YFFYCSLGEICAYRSIKYNHNSVQTYNSN*L*SNFDYCGT 387
           +LD C   E+ LK VC    F   ++G+I  Y     + NS +      + S  DYC +
Sbjct: 468 ILDKCLSFEDHLKTVCKSARFHLRNIGKIRKY----LDKNSTEILIHAFISSKLDYCNS 522


>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
          Length = 231

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +1

Query: 448 RSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
           R++ + +Y  +L++ T  ++ SFLPR + LW+ LP
Sbjct: 181 RTQHSEFYT-ILNARTDIYKYSFLPRALRLWNNLP 214


>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 349 NCKFVHYYDCILYFYKHKFRQDYSKKNINKDKQFLIYSQFDNRRQEQKFDNK*YACV 179
           NC ++ Y D IL +YK    +   K+N  K K  L     ++ R E  F +  YA V
Sbjct: 80  NCVWLQYVDDILQYYKE--NKAKGKENTVKVKDILKEIPDESARMETTFGSSAYAPV 134


>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
          Length = 284

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 112 HKRYIK*IKKTLHTLHAMYLTHTRMHT 192
           H RY   ++ TL T H  Y THT +HT
Sbjct: 138 HIRYTLHVRHTLRTTHTTYATHT-VHT 163


>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 436 TARHRSRV---NPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
           T+R+ +R    N Y L   H+    ++ S+ PRT+ LW+ LP
Sbjct: 722 TSRYNTRSYHPNNYRLFSTHNQNY-YRNSYFPRTVKLWNSLP 762


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +2

Query: 188  ILFIVKLLFLTSVVKLRID*KLFVFVNIFFTVVLAKFVLIEV*NTIIIVYKLTIPISYSR 367
            I+ IV ++ +  V+ +RI   + + +     ++++  V+I +   IIIV  LTI I  + 
Sbjct: 2122 IIVIVIIIIIIIVIVIRITIIIAIIIVANIVIIISIIVIIVIFIVIIIVIVLTITIIIAI 2181

Query: 368  ISTT 379
            I  T
Sbjct: 2182 IIVT 2185


>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 436 TARHRSRV---NPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
           T+R+ +R    N Y L   H+    ++ S+ PRT+ LW+ LP
Sbjct: 225 TSRYNTRSYHPNNYRLFSTHNQNY-YRNSYFPRTVKLWNSLP 265


>SB_133| Best HMM Match : Sushi (HMM E-Value=5e-40)
          Length = 607

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = +2

Query: 179 HACILFIVKLLFLTSVVKLRID*KLFVFVNIFFTVVLAKFVLIEV*NTIIIVYKLTIPI 355
           H C+  ++ ++ +  ++ + I   + + + I  TV++   V+I +  T+II+  + I I
Sbjct: 175 HHCVFIVINIIVVIIIITVIIIITVIIIIIIIITVIIIIIVIIII--TVIIIITVIIII 231


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 433  RTARHRSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELPYYSISRA 573
            R++R  SR   Y+   L ++ + F  SF PRTI  W+ LP   ++ A
Sbjct: 1625 RSSRRHSRT--YHQ--LQANILAFNYSFFPRTIRTWNLLPAEVVNAA 1667


>SB_1934| Best HMM Match : CHB_HEX_C (HMM E-Value=8.5)
          Length = 280

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 630 GRQQCQGQSQARRRKDMS*RSRNTVVGELTPKPDGTWQKRSLKTHCG 490
           G  + Q  ++A+  + M   +  T V ++    DGTWQKR   +  G
Sbjct: 108 GANRLQDLTEAQAPEKMHTLADGTRVADVAVSVDGTWQKRGHSSKLG 154


>SB_49942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 142 TLHTLHAMYLTHTRMHTIYCQT 207
           T+H +HA Y +HT  HTI   T
Sbjct: 27  TVHHVHASYNSHTARHTIQYDT 48


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 433  RTARHRSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELPYYSISRA 573
            R++R  SR   Y+   L ++ + F  SF PRTI  W+ LP   ++ A
Sbjct: 1071 RSSRRHSRT--YHQ--LQANILAFNYSFFPRTIRTWNLLPAEVVNAA 1113


>SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)
          Length = 1239

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -2

Query: 325 DCILYFYKH---KFRQDYSKKNINKDKQFLIYSQFD 227
           D ++  Y+H   K R D SKK I   +  +IY++FD
Sbjct: 145 DTLVEIYRHVGEKVRIDLSKKGIPSSRLSVIYAKFD 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,933,516
Number of Sequences: 59808
Number of extensions: 489028
Number of successful extensions: 1227
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)