Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30096
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    29   0.80 
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    26   4.3  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   4.3  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    26   5.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.5  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   9.9  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   9.9  

>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 366 ACW-HPQLMDKSDLHFYLSWLKDQLKTNAEEMTA--ELEHAEQVMLEHEKE 509
           A W  P+L D   L+ Y     D L     +M     LE  EQ+  EHEK+
Sbjct: 253 AIWLDPKLTDSYSLYQYFISAPDDLACKCLDMLTLLPLEQLEQIKAEHEKD 303


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 263 TKYLHPRFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIRIL 129
           +KY  P+F+F K  ++E + + +G+ +  M   V  + G  I +L
Sbjct: 46  SKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDML 90


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 228 LSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMD 392
           L  DK+++K+F E K   ++  P  N++   D F       +I +L C H  LM+
Sbjct: 76  LQNDKTKLKLFGEIKVHQSMSHP--NIVGFIDCFEDSTNIYLILEL-CEHKSLME 127


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 198 EWCGPC*YASGG*ERLRHRHQ 136
           +WCGPC Y     E+L  ++Q
Sbjct: 45  DWCGPCKYLKPFLEKLSEQNQ 65


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 426 KDQLKTNAEEMTAELEHAEQVMLEHEKE 509
           +D+ +   EE+  E+E+A+   L HE+E
Sbjct: 121 QDEYQRKLEELKKEIEYAKTKSLFHERE 148


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 508 KSSPINTNITREKAHHSDAGNEKYSSLYSSF 600
           K S  N+N  +EK  H+    EK + +YS F
Sbjct: 237 KDSMFNSNSEKEKIMHALEKAEKDADIYSEF 267


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 194 GVVLADMRQEVEKDFGTGIRILVRQIFLA 108
           GVVL+D     E +F T  R + RQ+ +A
Sbjct: 647 GVVLSDFEWTAENNFLTASRKVKRQVIVA 675


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 351 IIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNAEE---MTAEL-EHAEQVMLEHEKEKF 515
           I A++  +  + ++ S   F +   K ++ T A E    TAE  +HAE++ L  EKEKF
Sbjct: 31  IRAQIQSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEI-LSREKEKF 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,432
Number of Sequences: 5004
Number of extensions: 52245
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)