Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30096
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   1e-12
SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         29   2.6  
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)                     29   3.4  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)                    29   3.4  
SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)                   29   4.5  
SB_12617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)             28   6.0  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    28   6.0  
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)              28   6.0  
SB_19290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_58788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 48.8 bits (111), Expect(2) = 1e-12
 Identities = 24/54 (44%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 IIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNAEEMTAELEHAEQVMLEHEKEK 512
           I+AKLACW    + +SDL+F+LSWLK+QL +   E    +  + Q+ML  E  K
Sbjct: 123 IVAKLACWGNVRLPESDLNFFLSWLKNQLTSPTCEYLHSIALSLQLMLRVESYK 176



 Score = 41.5 bits (93), Expect(2) = 1e-12
 Identities = 18/32 (56%), Positives = 26/32 (81%)
 Frame = +3

Query: 138 DACAEVFLNLLTHISKDHTIQYILVLIDDILS 233
           D  A+  L+LL  +++DHTI+YILVLIDD+L+
Sbjct: 88  DQLAKTCLSLLVKLTRDHTIRYILVLIDDMLN 119



 Score = 36.3 bits (80), Expect = 0.023
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 7   ASEIRQTQINWQSYLQSQMITQRDHDFIVN 96
           A E+R+  +NWQSY+  +MI+Q D+  I +
Sbjct: 41  AVEVRKQTVNWQSYVHGKMISQEDYSMIAD 70


>SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +3

Query: 339 MTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNAEE--MTAELEHAEQVMLEHEKEK 512
           M+ + ++  A  +   + KS+ H   S +K   KT   +  M AEL H  + M+E ++ K
Sbjct: 2   MSRKALSDKAANYRSKLQKSE-HSKKSQIKIMKKTQESQLQMKAELIHNLEEMIEEQESK 60

Query: 513 FSDKHKHHKGEGSS 554
            S+    +KGE  S
Sbjct: 61  ISELEARNKGENIS 74


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 429 DQLKTNAEEMTAEL-EHAEQVMLEHEKEKFSDKHKHHKGE 545
           +QLK N E+M   L E  E++ LE+E+ K+S + +   G+
Sbjct: 756 EQLKNNNEKMLVRLKEDKEKLRLEYEEMKYSGEARLSSGQ 795


>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
          Length = 215

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 288 WQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNAEEMTAE 467
           W   L  LNR  + ++   +  +  + C H +  D  D   +L+ LKD +++N      +
Sbjct: 56  WDTALEDLNRLKDVIESNIS--LKAMKCHHSENTDTLDHSDHLNRLKDVIESNISLKAMK 113

Query: 468 LEHAEQV-MLEH 500
             H+E    L+H
Sbjct: 114 CHHSENTDTLDH 125


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 517  PINTNITREKAHHSDAGNEKYSSLYSSFDELKP 615
            PINTN+T  KAH  D+G    S ++ + D   P
Sbjct: 1523 PINTNVTTIKAHDDDSGLN--SRIWYTIDSQSP 1553


>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
          Length = 289

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
 Frame = +3

Query: 105 RGQKDLPDKNPDACAEVFLNLLTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGN 284
           R Q     +         + L   I+K H I Y L   D I   + +  ++  +     +
Sbjct: 103 RNQSQYSHRQGQLITTRMMRLFDLIAKKHNISYWLTSADYIKFFEVAAKELPSDMFLQNS 162

Query: 285 VWQPFLNLLNRQ-DEFVQHMTARIIAKLACWHPQLMDKSDLHFY 413
           +  P+L   N+Q    + H    I  +   W+P+L DK   + Y
Sbjct: 163 ISDPYLRPDNKQYAASITHPKVGIYQR--SWNPRLRDKKSCYKY 204


>SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)
          Length = 769

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 426 KDQLKTNAEEMTAELEHAEQVMLEHEKEKFSDKHKHHKGEGS 551
           K++ ++  ++  +  EH +    E +K+K S KHKH K  G+
Sbjct: 715 KEKRRSRHKDNDSAKEHRKSRDEEGDKKKKSSKHKHSKRRGT 756


>SB_12617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 426 KDQLKTNAEEMTAELEHAEQVMLEHEKEKFSDKHKHHKGEGS 551
           K++ ++  ++  +  EH +    E +K+K S KHKH K  G+
Sbjct: 83  KEKRRSRHKDNDSAKEHRKSRDEEGDKKKKSSKHKHSKRRGT 124


>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
          Length = 999

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 441  TNAEEMTAELEHAEQVMLEHEKEKFSDKHKHHKGE 545
            + AE+   E+E A   + +H+K+K   KH+  KG+
Sbjct: 944  SGAEQRMKEVEAAMSEIRKHKKKKKKHKHRDEKGK 978


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 429 DQLKTNAEEMTAEL-EHAEQVMLEHEKEKFSDKHK 530
           D  KT   E   E  EH E  + EHE+E+  +KHK
Sbjct: 215 DVNKTKPVEAWLERKEHREDSLSEHEREEVKNKHK 249


>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
          Length = 713

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 481 SRLCWSMRKKSSPINTNITREKAHHSDAG 567
           S + W+ RK+SSPI     R   HH+  G
Sbjct: 632 SYVYWAFRKESSPIERPAERALRHHNSDG 660


>SB_19290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
 Frame = +3

Query: 222 DILSEDKSRVKIFRETKFSGNVWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDKSD 401
           ++ S+DK    I      +G  ++P + LL ++  FVQH T  +  K A    +  D   
Sbjct: 243 NVNSQDKDGKTILMNAVLNG--FEPLVKLLVKKGAFVQHKT--LHGKTALDFARAFDHER 298

Query: 402 L-HFYLSWLKDQLKTNAEEMTAEL-EHAEQVMLEHEKEKFS 518
           +  F   +L +Q + + +    E+ E ++  +   EKE  S
Sbjct: 299 IVSFLQQYLDEQKQADKQRQVEEVREKSKSEVDGEEKENVS 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,388,347
Number of Sequences: 59808
Number of extensions: 408301
Number of successful extensions: 1258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)