Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30095
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    65   3e-13
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   0.25 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   3.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   3.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   3.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   7.1  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   7.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.1  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 64.9 bits (151), Expect = 3e-13
 Identities = 41/138 (29%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
 Frame = +2

Query: 11  LITGAASGIGEGVVRLILERGVKHVAILDVAEDSGRXLENELNTKYGPNSVKFYKCDVTD 190
           L+TGA SGIG+ ++  ++ +G+K + I     D  + L  EL +K  P  +   +CD+++
Sbjct: 11  LVTGANSGIGKCLIECLVGKGMKVIGIAPQV-DKMKTLVEELKSK--PGKLVPLQCDLSN 67

Query: 191 EELFLELFDTVKNEQGYLDVVINNAAI------MNDSYKSYKKQIDINVTALVTGTLKAI 352
           +   L++ + V+   G +D++INNA I       ND    +KK  DIN+  L     + +
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVL 127

Query: 353 EIMGKQNGGKGXTVLNIS 406
           ++M K+ G     ++NI+
Sbjct: 128 KLM-KKKGINNGIIVNIN 144



 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 43  RSGPAYIGARCQACCYFGCCR 105
           R+ PAY+ ++C       C R
Sbjct: 156 RNRPAYLASKCALTTLTDCLR 176


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.25
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 131 ELNTKYGPNSVKFYKCDVTDEELFLELFDTVKNEQGYLDVVINNAAIMNDS-YKSYKKQI 307
           E   K   N  ++ K   T +E F +  +  ++++  +   ++N  I N++ YK+Y K++
Sbjct: 277 EREQKSYKNEREYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKL 336

Query: 308 DINV 319
             N+
Sbjct: 337 YYNI 340


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 60  YWSEVSSMLLFWMLPRIL 113
           +WS + S +L W + +I+
Sbjct: 395 FWSFIVSTILLWFINKII 412


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 124 EXSSRILGNIQNSNMLDTSLQYKPDHSFADTACGTSDKH 8
           E ++R+   +    +      YK  HS ++   GTS+K+
Sbjct: 422 EKAARMQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKY 460


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 124 EXSSRILGNIQNSNMLDTSLQYKPDHSFADTACGTSDKH 8
           E ++R+   +    +      YK  HS ++   GTS+K+
Sbjct: 422 EKAARMQAKVNRQPVWFYYYTYKGAHSISEIMSGTSNKY 460


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 194 ELFLELFDTVKNEQGYLDVVINNAAIMN 277
           E+F E   T K +   +DVV+N   ++N
Sbjct: 17  EVFSEDKYTTKYDNVDIDVVLNTERLLN 44


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 194 ELFLELFDTVKNEQGYLDVVINNAAIMN 277
           E+F E   T K +   +DVV+N   ++N
Sbjct: 17  EVFSEDKYTTKYDNVDIDVVLNTERLLN 44


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 206 ELFDTVKNEQGYLDVVINNAAIMNDSYKSYKKQID 310
           ++F  + +  G +   I NAAI  D Y +  + +D
Sbjct: 121 QIFAVIGSLTG-IGAAITNAAIAYDRYSTIARPLD 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,106
Number of Sequences: 438
Number of extensions: 2182
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)