Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30094
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    29   4.2  

>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 267 PNPDHAGASHRRRPXHVLTDPSD 335
           PN DH G +HRR+  H   DPSD
Sbjct: 198 PNVDHTGHNHRRKRNHD-DDPSD 219



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 267 PNPDHAGASHRRRPXHVLTDPSD 335
           PN DH G +H RR  +   DPSD
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSD 264



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 267 PNPDHAGASHRRRPXHVLTDPSD 335
           PN DH G +HRRR      DPSD
Sbjct: 287 PNVDHTGHNHRRRRDQD-DDPSD 308


>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -3

Query: 624 GQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAW 445
           G+VGE++ S++  D++  + AP  E  + +     NE     E    EK+  E ++A A 
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETE-----NEEEDDKEKTDKEKLDAEKEKALAE 218

Query: 444 VRL 436
            RL
Sbjct: 219 KRL 221


>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
           protein C28A5.6 protein.
          Length = 1061

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -3

Query: 624 GQVGEQRLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAW 445
           G+VGE++ S++  D++  + AP  E  + +     NE     E    EK+  E ++A A 
Sbjct: 164 GEVGEKKESEQPTDMVEPSSAPTTEETETE-----NEEEDDKEKTDKEKLDAEKEKALAE 218

Query: 444 VRL 436
            RL
Sbjct: 219 KRL 221


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 561 PPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAWVRLHFDXFVEFDE 406
           PPK   +L++N F   S+     R     RR  +  D W  L ++   + DE
Sbjct: 801 PPKNYEKLRNNDFNPVSSFRKGHRVISHWRRTDEMLDIWFALRYEELEDLDE 852


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,597,628
Number of Sequences: 27780
Number of extensions: 251312
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)