Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30093
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 57 8e-09
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215... 30 1.1
04_03_0664 + 18501248-18502802,18503370-18505054 29 1.9
11_01_0477 - 3688357-3690042 29 2.5
01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586... 28 4.4
02_03_0091 + 15112390-15112396,15113469-15113962 28 5.8
11_03_0186 + 11332864-11333697 27 7.6
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 27 7.6
03_02_0241 - 6731004-6731078,6731200-6731409,6731503-6731632,673... 27 7.6
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 57.2 bits (132), Expect = 8e-09
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Frame = +1
Query: 229 GVA-LPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQ 405
GVA +FGVP++ +V+R + +PLV+ DYL GL ++ ++++E +K QQ
Sbjct: 124 GVASTDVFGVPIEATVQREQ--SGKAVPLVLVRCADYLVISGLSNEYLFKSEGEKKVLQQ 181
Query: 406 LRKLFT-DRGPTFPYHWDVPVACAMLKAFISELPESILTQELHRSVR 543
L L+ D G FP + A++K +++ +PE + T L+ +R
Sbjct: 182 LVSLYNEDSGAPFPDGVNPIDVAALIKCYLASIPEPLTTFSLYDELR 228
>01_06_0230 + 27718840-27720188,27720983-27721174,27721488-27721569,
27721651-27721839,27721964-27722077,27722470-27722560,
27722632-27722789,27723401-27723826,27724355-27724727,
27725075-27725238
Length = 1045
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -1
Query: 357 F*SVCL*VIDAVSDDQRQTGVVMATRALHRLLQWYT-EYRERNSQCENFFKRNT-RCHR 187
F SV V A SD Q + R WYT E+ E++ +CENF+ T RC R
Sbjct: 973 FLSVSTSVEKASSDQQMLPCSLWLFRQNFDTFSWYTKEHMEKSYRCENFWVNYTHRCPR 1031
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 213 RNFHIGSCAPYIRCTTATVCGALSL 287
+ H+GSC Y C ++CG SL
Sbjct: 827 KKLHVGSCGTYETCLVNSLCGLTSL 851
>11_01_0477 - 3688357-3690042
Length = 561
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 358 ILIRVPVSNRCCLGRPAADRCRHGN 284
+L V VS RCC GR A +C H +
Sbjct: 295 VLKLVDVSPRCCCGRRGATQCDHSS 319
>01_07_0067 -
40857544-40858164,40858265-40858370,40858541-40858659,
40859195-40859392,40859659-40859724,40859798-40859916,
40860295-40860580
Length = 504
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 320 RTTSGRPVSSWQRERSTDCCSGTPNIGSATPNVKISS 210
R + R S WQRE+STD S +P K SS
Sbjct: 50 RQWTERVRSLWQREKSTDQISSSPGTSQVAAAAKPSS 86
>02_03_0091 + 15112390-15112396,15113469-15113962
Length = 166
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 256 PLQQSVERSRCHDDTGLPLVVRDSI 330
PL + + HDDTG PL++ D +
Sbjct: 132 PLPSDLSYAFLHDDTGSPLIISDKL 156
>11_03_0186 + 11332864-11333697
Length = 277
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 272 TDCCSGTPNIGSATP-NVKISSKGTPDV 192
T CCS P+IG TP + S+G P V
Sbjct: 157 TGCCSLLPSIGDPTPLRLAYFSRGVPHV 184
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 310 LVVRDSIDYLQAHGLKSKDIY-RTEP---DKIKFQQLRKLFTDRGPTFPYHWDVPVACAM 477
LV R L+A G ++ I R+ P ++++ + R + DR P FPY W+ + ++
Sbjct: 3103 LVARPMASILEATGRTAQSIRNRSNPHESNRLRVRFPRPVARDR-PLFPYSWEEAIGISL 3161
Query: 478 L 480
L
Sbjct: 3162 L 3162
>03_02_0241 -
6731004-6731078,6731200-6731409,6731503-6731632,
6731719-6731889,6731991-6732113,6732238-6732342,
6732483-6732490
Length = 273
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 415 LFTDRGPTFPYHWDVPVACAMLKA-FISELPESILTQELHRSVRTSH 552
L D GP P WD+ + A+ A I+ L E + + +HR +++S+
Sbjct: 54 LHGDVGPVSPLTWDIRMKIAVGTAKGIAYLHEGLEPKVVHRDIKSSN 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,049,750
Number of Sequences: 37544
Number of extensions: 239107
Number of successful extensions: 715
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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