Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30093
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   6.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   6.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 172 TKIPSTVTSGVPFEEIF 222
           TKI + + + VPF++IF
Sbjct: 234 TKIDNEIFNRVPFDKIF 250


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 112 WTFPYLC 92
           W FPYLC
Sbjct: 5   WRFPYLC 11


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 112 WTFPYLC 92
           W FPYLC
Sbjct: 43  WRFPYLC 49


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 112 WTFPYLC 92
           W FPYLC
Sbjct: 96  WRFPYLC 102


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 290 WQRERSTDCC 261
           WQ ERS  CC
Sbjct: 69  WQMERSCMCC 78


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 295 DTGLPLVVRDSIDYL 339
           D G P+V  +++DY+
Sbjct: 165 DIGKPVVAEETVDYM 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,801
Number of Sequences: 438
Number of extensions: 2522
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)