Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30091
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    74   2e-14
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    52   1e-07
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    28   1.0  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    27   2.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.2  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   5.5  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.5  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   5.5  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    26   5.5  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   7.3  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   9.7  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   9.7  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
 Frame = +3

Query: 168 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 347
           + VG  LP   L+E+ P   V   E  +  K ++  VPGAFTP CS + +PGY+ N  + 
Sbjct: 2   VAVGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQF 57

Query: 348 KSDGVAEIVCVSVNDPYVMAAWGAHHN--TKGKVRMLADPSGNFIKALDLG 494
            + G++ I  V+VND +V  AW    +   +  V  +AD +G F KA D G
Sbjct: 58  AAKGISGIYVVAVNDVFVTKAWKKSFDGGEQSGVHFVADWNGEFTKAFDAG 108


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 34/106 (32%), Positives = 54/106 (50%)
 Frame = +3

Query: 168 IKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKL 347
           I+VGD +P   L  D     + + ++TA K +V+FA P A TPGC+K    G+  N  K+
Sbjct: 46  IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103

Query: 348 KSDGVAEIVCVSVNDPYVMAAWGAHHNTKGKVRMLADPSGNFIKAL 485
           ++    E++ +S +      A+    N      +L+DP G  IK L
Sbjct: 104 QASDY-EVLGLSFDTSKAQKAFKDKQNF--PYHLLSDPKGELIKKL 146


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 222 NKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVA--EIVCVSVND 392
           NK  + EL    KV++      +   C K   P Y   AD+L+ DG++  E+ C    D
Sbjct: 28  NKEGLNELITADKVLMVKFYAPWCGHC-KALAPEYESAADELEKDGISLVEVDCTEEGD 85


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 374 HYFSNSIRFQFICVLYVSRQVCFRTSRGEG 285
           H+   S+RF+ +  LY    VC  TS  +G
Sbjct: 365 HFLHKSVRFEELVALYNVSDVCLITSTRDG 394


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 650  YYTLPYFTLXLSAREQDRPVPSGSTFRSWTLLSTM 546
            Y T+P F   ++   + +P+P+ ST RS+T    +
Sbjct: 1353 YLTIPDFPRQINGILEGKPLPTKSTKRSYTTFGVL 1387


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 92  YPWHYRIHQSSVSASTSHFTIKHGTN 169
           +P   + H +S+S+   HF+++H  N
Sbjct: 653 FPQALKAHMNSISSPKRHFSLRHKKN 678


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 62  VEVFTMVVTLLIIYFVISIV 3
           V +FT V+T++I+YF  S++
Sbjct: 117 VLIFTYVMTVIIVYFSFSLI 136


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 62  VEVFTMVVTLLIIYFVISIV 3
           V +FT V+T++I+YF  S++
Sbjct: 117 VLIFTYVMTVIIVYFSFSLI 136


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 362 NSIRFQFICVLYVSRQVCFRTSRG 291
           NSI+  F+C++Y+S+ + ++   G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 506 AASEVSAPKGSRWSSLTARSKI 571
           A S +S+P G+R SS+T ++K+
Sbjct: 2   AISSLSSPSGARVSSVTVKNKV 23


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 562 PCCQR*PSRTFWSGNLRSG 506
           PC    PS TF+ G L++G
Sbjct: 634 PCLSEFPSNTFYEGTLQNG 652


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 452 SRSQRQLHQGSGPGHQSAAASEVSAPKGSRWSS 550
           +RSQ + +  S P   ++A +  +  K S+WSS
Sbjct: 84  TRSQYKPNSTSNPSKHTSAYASYNKGKNSKWSS 116


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 638 PYFTLXLSAREQDRPVPSGSTFRSWTLLSTMTIENLLERK 519
           PY+T  L       PV   S    W++L      +LLERK
Sbjct: 94  PYYTKALPQGFSFHPVTLTSDHPLWSILPDEVRNSLLERK 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,988
Number of Sequences: 5004
Number of extensions: 56212
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)