Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30091
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 115 4e-26
06_03_0811 + 24830496-24831194 112 3e-25
02_01_0691 - 5167260-5167937 107 1e-23
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 93 2e-19
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 44 8e-05
10_05_0053 + 8602142-8603581 32 0.47
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 31 0.81
06_01_0671 - 4899611-4899829,4900870-4901448 30 1.9
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 29 2.5
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545... 29 2.5
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 29 3.3
02_05_0637 + 30543158-30543895 29 3.3
07_03_1101 + 23967298-23967366,23968918-23969021,23969616-239697... 29 4.3
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 28 5.7
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500... 28 7.6
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 115 bits (276), Expect = 4e-26
Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 3/118 (2%)
Frame = +3
Query: 159 MAPIKVGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYV 329
MAP+ VGD LP L F+ + +V++ L AGKKVVLF VPGAFTP CS H+PG++
Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFI 60
Query: 330 QNADKLKSDGVAEIVCVSVNDPYVMAAWGAHHNTKGKVRMLADPSGNFIKALDLGTNL 503
A++LK+ GV +I+ VSVNDP+VM AW + V+ LAD G + KAL L +L
Sbjct: 61 NQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDL 118
>06_03_0811 + 24830496-24831194
Length = 232
Score = 112 bits (269), Expect = 3e-25
Identities = 60/131 (45%), Positives = 84/131 (64%), Gaps = 4/131 (3%)
Frame = +3
Query: 123 ASARALHISQLSMAPIKVGDQLPAADL-FEDSPANK---VNICELTAGKKVVLFAVPGAF 290
A RA+ S + A I VGD+LP A L + DSP + V + +LTAGKKVVLFAVPGAF
Sbjct: 56 APRRAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAF 115
Query: 291 TPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAHHNTKGKVRMLADPSGN 470
TP C++ H+PG+V A +L++ GV + CVSVND +VM AW +V +L+D +G
Sbjct: 116 TPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGE 175
Query: 471 FIKALDLGTNL 503
+A+ + +L
Sbjct: 176 LARAMGVELDL 186
>02_01_0691 - 5167260-5167937
Length = 225
Score = 107 bits (256), Expect = 1e-23
Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Frame = +3
Query: 99 GITAFTNRASARALHISQLSMAPIKVGDQLPAADLFEDSPAN----KVNICELTAGKKVV 266
G+ A RA+ R+ + +A I VGD+LP A L PA+ V + ELTAG+K V
Sbjct: 40 GVRAAGARAARRSAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAV 99
Query: 267 LFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW 413
LFAVPGAFTP CS+ HLPG+++ A +L + GV I CVSVND +VM AW
Sbjct: 100 LFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAW 148
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 92.7 bits (220), Expect = 2e-19
Identities = 40/84 (47%), Positives = 53/84 (63%)
Frame = +3
Query: 252 GKKVVLFAVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAHHNT 431
GKKVV+F +PGA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129
Query: 432 KGKVRMLADPSGNFIKALDLGTNL 503
K + D G+F K+LDL +L
Sbjct: 130 KDAIEFYGDFDGSFHKSLDLEVDL 153
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 44.4 bits (100), Expect = 8e-05
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Frame = +3
Query: 117 NRASARALHISQLSMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTP 296
+ SA+A S ++M + +GD +P +L DS K+ I + V+LF+ PG FTP
Sbjct: 23 HETSAKAAQ-SFVAMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDFTP 79
Query: 297 GCSK--THLPGYVQNADKLKSDGVAEIVC--VSVNDPYVMAAWGAHHNTKGKVRMLADPS 464
C+ + GY + DK + + I C V + ++ + ++ADPS
Sbjct: 80 VCTTELAAMAGYAKEFDK-RGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMADPS 138
Query: 465 GNFIKALDL 491
IK L++
Sbjct: 139 REAIKQLNM 147
>10_05_0053 + 8602142-8603581
Length = 479
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 608 EQDRPVPSGSTFRSWTLLSTMTIENLLERKPPKRRQIGA 492
E D V +T R W L E + RKPP RR +GA
Sbjct: 75 ETDDLVRCAATCRRWRRLVAGDAEYICRRKPPSRRYVGA 113
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 31.1 bits (67), Expect = 0.81
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Frame = +3
Query: 207 EDSPANKVNICELTAG------KKVVLFAVP---GAFTPGCSKTHLPGYVQNADKLKSDG 359
E P + +CELT +K + F P GAF K P Y + D L G
Sbjct: 145 EGFPYARPPVCELTGDIRISPKEKTMFFVNPSSAGAFDGNGEKKIRP-YARKDDFLLP-G 202
Query: 360 VAEIVCVSVNDPYVMAAWGAHHNTKGKVRMLADPSGNF 473
V E++ SV+ P + A HN V +A + NF
Sbjct: 203 VVEVIIKSVSSPAIAPACTRTHNVPAVVFSVAGYTDNF 240
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +3
Query: 156 SMAPIKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 335
S + G P L D V++ + G+ VV++ P TPGC+K + +
Sbjct: 114 SSVQVSKGSAAPNFTL-RDQDGRAVSLSKFK-GRPVVVYFYPADETPGCTK-QACAFRDS 170
Query: 336 ADKLKSDGVAEIVCVSVND 392
+K K G AE++ +S +D
Sbjct: 171 YEKFKKAG-AEVIGISGDD 188
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/61 (37%), Positives = 29/61 (47%)
Frame = -2
Query: 616 RRENKTGQCHRAPHSDLGPCCQR*PSRTFWSGNLRSGGRLVPRSRALMKLPLGSASIRTF 437
RRE +T H PHSDL P R P RT + + GRL +A LP +A+
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRT----SAAASGRL-QEKQAPPPLPHAAATAAPL 238
Query: 436 P 434
P
Sbjct: 239 P 239
>08_01_0627 +
5451140-5451839,5452635-5452662,5452730-5452786,
5453205-5453874
Length = 484
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 339 LRSVRIPASVF*NIPG*RRPAPQIIQPSFPPSTHKYSPY*RENLRINQQQAADPRP 172
LR + A++ P +P PQ+ PSFP +T S R R + DP+P
Sbjct: 13 LRDAQSAAALSNPNPPEPQPQPQLATPSFPTTTDTASRRRRRRRRRGRGNRHDPQP 68
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 273 AVPGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAHHNT 431
A+ G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>02_05_0637 + 30543158-30543895
Length = 245
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 544 PSRTFWSGNLRSGGRLVPRSRALMKLPLGSASIRTFP 434
P R WSGNLR G R R +LM ++ + +FP
Sbjct: 83 PPRRAWSGNLRVGAR--ERLESLMLARRSTSDLSSFP 117
>07_03_1101 +
23967298-23967366,23968918-23969021,23969616-23969716,
23969792-23969858,23969910-23970045,23970470-23970583,
23970649-23970786,23970865-23970949,23971029-23971075,
23971216-23971351,23971396-23971436
Length = 345
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2
Query: 449 ASRSQRQLHQGSGPGHQSAAASEVSAPKGSRWSSLTARSKI*MWSPMALACLVLS 613
AS S H SG G S A V + K +RW S + + W+P +L L S
Sbjct: 260 ASFSPDGNHIISGSGDGSVYAWNVRSGKVARWGSTDSEPPLIRWAPGSLMFLTAS 314
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 144 ISQLSMAPIKVGDQLPAADLFEDSPANKVN-ICELTAGKKVVLFAVPGA 287
+S +AP+++G P++ + SPA V+ + VL +PGA
Sbjct: 32 LSMADLAPVQIGPSSPSSPMSPASPATPVDAYANAPPPSEDVLLRIPGA 80
>08_02_1430 -
27048055-27048408,27049674-27049841,27049927-27050042,
27050153-27050305,27050850-27050993,27051052-27051211,
27051332-27051970
Length = 577
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 316 KCVLEHPGVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAG 188
K VLEHP +K TA N + AV +++ A K A G
Sbjct: 362 KQVLEHPWLKNADTAPNVSLGDAVRARLQQFSAMNKFKKKALG 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,091,373
Number of Sequences: 37544
Number of extensions: 450212
Number of successful extensions: 1157
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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