Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30088
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    58   1e-09
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    35   0.011
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    29   0.55 
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    27   1.7  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.8  

>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 27/85 (31%), Positives = 46/85 (54%)
 Frame = +1

Query: 226 DMAHRQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDLRSRIIEW 405
           ++   +H+ +F R L + P+    HD  R  +A+F + GLD+L +++ I  D +   IEW
Sbjct: 2   ELTRAKHIAFFKRHLILFPTPYEEHDCERTVLAFFCLLGLDLLNALNTIDDDDKKSWIEW 61

Query: 406 LYRLQVHPDKETGDMSLCGFQGSST 480
           +Y+  V   KE+  +   GFQ   T
Sbjct: 62  IYKNYV--TKESKGIKYSGFQAYRT 84



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 551 LCILLALGDDLSRINRTALIQXVK 622
           +C LL LGD+LSRI+R  +   V+
Sbjct: 104 ICCLLFLGDNLSRIDRDLIKNFVE 127


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +1

Query: 202 IMNNEGNKDMAHRQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISA 369
           ++N E ++    ++H+KY  + L+ LPS  +  D +R  + Y+ ++ L +LG + +
Sbjct: 21  LLNGE-SQSFNLQKHLKYLTKMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDS 75


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 202 IMNNEGNKDMAHRQHVKYFMRFLNILPSS 288
           ++NN+    M H+ H K+ +R L I+PSS
Sbjct: 767 LLNNKSMDGMQHQPHEKHSIRTLAIVPSS 795


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 590 FSTGHRPTPAVYTDP-VYVIARWPHRN*LLSGSSLMFIVEEPWKPHSDMSPVSLSGCT 420
           F + H PT   +  P V    R  H N   +GS  + I+ + W P   +S V LS C+
Sbjct: 51  FLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICS 108


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 255 FHEIFEYFAFVSIITRYYKSYNSIF 329
           F+ IF  FAFVS  T+Y   Y+  F
Sbjct: 79  FYLIFGIFAFVSFTTQYLGIYSFSF 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,933
Number of Sequences: 5004
Number of extensions: 53961
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)