Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30088
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54406| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 8e-13
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16) 51 7e-07
SB_31720| Best HMM Match : Peptidase_M10 (HMM E-Value=1e-30) 31 1.0
SB_18122| Best HMM Match : F5_F8_type_C (HMM E-Value=4e-32) 29 2.4
SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_40904| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_50601| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 27 9.5
SB_29062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_57707| Best HMM Match : Stig1 (HMM E-Value=2.7) 27 9.5
>SB_54406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 70.9 bits (166), Expect = 8e-13
Identities = 32/73 (43%), Positives = 48/73 (65%)
Frame = +1
Query: 220 NKDMAHRQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDLRSRII 399
N D +H+K+F R L +LPS SS DT+RVT+A+F+++ LDVL ++ I + + II
Sbjct: 16 NDDFLREKHIKFFKRCLAVLPSEYSSLDTSRVTVAFFAISALDVLDALDCIEKE-KKDII 74
Query: 400 EWLYRLQVHPDKE 438
EW+Y QV P +
Sbjct: 75 EWIYSHQVPPKSD 87
>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
Length = 713
Score = 51.2 bits (117), Expect = 7e-07
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = +1
Query: 220 NKDMAHRQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDLRSRII 399
N D +H+K+F R L +LPS SS DT+R+T D+ S
Sbjct: 16 NDDFLREKHIKFFKRCLAVLPSEYSSLDTSRIT--------------AKVCRYDMNS--- 58
Query: 400 EWLYRLQVHPDKETGDMSLCGFQGSSTINIRL-DPDN-NQFRCGHLAMTYT 546
+L + P G CGF+GSST L DP++ +++ GH+AMTYT
Sbjct: 59 ----QLAILPSGTNG--GRCGFRGSSTAGCNLKDPESVHEYEYGHIAMTYT 103
Score = 35.1 bits (77), Expect = 0.047
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +2
Query: 551 LCILLALGDDLSRINRTALIQXVKAL 628
L +LL LGDDLSRINR A+I+ ++ L
Sbjct: 105 LAMLLILGDDLSRINRPAIIEGLRHL 130
>SB_31720| Best HMM Match : Peptidase_M10 (HMM E-Value=1e-30)
Length = 284
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 247 VKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISL 378
+KY +F I PS +HD + S AGL V G I A ++
Sbjct: 80 LKYLNQFHYISPSRSGNHDVKTALEKFQSFAGLPVTGEIDAATI 123
>SB_18122| Best HMM Match : F5_F8_type_C (HMM E-Value=4e-32)
Length = 455
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 208 NNEGNKDMAHRQHVKYFMRFLNILPSSLSSHDTTRVTI 321
NN+G + + K F RFL I P S +H R I
Sbjct: 200 NNDGKAKSTSQMNSKLFTRFLRIYPKSWRNHICMRADI 237
>SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 247 VKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISL 378
+KY +F I P+ +HD + S AGL V G I A ++
Sbjct: 624 LKYLNQFHYISPARSGNHDVKTALEKFQSFAGLPVTGEIDAATI 667
>SB_40904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 250 KYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISL 378
KY +F I P+ +HD + S AGL V G I A ++
Sbjct: 36 KYLNQFHYISPARSGNHDVKTALEKFQSFAGLPVTGEIDASTI 78
>SB_50601| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 515
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 247 VKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISL 378
+KY +F I P+ +H+ + S AGL V G I A ++
Sbjct: 127 LKYLNQFHYISPARSGNHNVKTALEKFQSFAGLPVTGEIDAATI 170
>SB_29062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = -3
Query: 364 IWILRHPGRQQRNMXXXXX*YRVMIETKAKYSKIS*NILRADDEPYPCFLRYSLLYVNC 188
IW+ R PG Q RN+ R++ TK + +++ + D Y CF+ Y + +++C
Sbjct: 137 IWLRRVPGNQTRNIN------RLIERTKRRMARM---VSVIDYAYYICFVPYWIGWISC 186
>SB_57707| Best HMM Match : Stig1 (HMM E-Value=2.7)
Length = 159
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 574 AQRQQYTQTQCTSSLDGRIEIDCYPDPVLCLSLRSLG 464
A+RQ Y +QC R C P P C+S S G
Sbjct: 94 ARRQCYHNSQCKPDFMCRYPGMCEPSPGYCISPNSCG 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,907,768
Number of Sequences: 59808
Number of extensions: 384840
Number of successful extensions: 769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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