Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30088
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25441-1|AAA35888.1|  377|Homo sapiens geranylgeranyltransferase...   100   8e-21
AY780790-1|AAV98360.1|  300|Homo sapiens geranylgeranyltransfera...    96   1e-19

>L25441-1|AAA35888.1|  377|Homo sapiens geranylgeranyltransferase
           type I beta-subunit protein.
          Length = 377

 Score = 99.5 bits (237), Expect = 8e-21
 Identities = 49/120 (40%), Positives = 78/120 (65%), Gaps = 6/120 (5%)
 Frame = +1

Query: 208 NNEGNK-DMAHRQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDL 384
           + EG + D    +HV++F R L +LP   SS +T+R+TIA+F+++GLD+L S+  ++ D 
Sbjct: 12  SGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKD- 70

Query: 385 RSRIIEWLYRLQVHPDKETGDMSLCGFQGSSTINIRLDPDN-----NQFRCGHLAMTYTG 549
              IIEW+Y LQV P ++  +++ CGF+GSS + I  +P       + +  GH+AMTYTG
Sbjct: 71  --DIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTG 128



 Score = 32.7 bits (71), Expect = 1.1
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +2

Query: 548 GLCILLALGDDLSRINRTALIQXVKAL 628
           GL  L+ LGDDLSR+N+ A +  ++AL
Sbjct: 128 GLSCLVILGDDLSRVNKEACLAGLRAL 154


>AY780790-1|AAV98360.1|  300|Homo sapiens geranylgeranyltransferase
           type I beta subunit protein.
          Length = 300

 Score = 95.9 bits (228), Expect = 1e-19
 Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 6/120 (5%)
 Frame = +1

Query: 208 NNEGNK-DMAHRQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDL 384
           + EG + D    +HV++F R L +LP   SS +T+R+TIA+F+++GLD+L S+  ++ D 
Sbjct: 12  SGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKD- 70

Query: 385 RSRIIEWLYRLQVHPDKETGDMSLCGFQGSSTINIRLDPDN-----NQFRCGHLAMTYTG 549
              IIEW+Y LQV P ++  +++ CGF+GSS + I  +P       + +  GH+AMT TG
Sbjct: 71  --DIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTCTG 128



 Score = 32.7 bits (71), Expect = 1.1
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +2

Query: 548 GLCILLALGDDLSRINRTALIQXVKAL 628
           GL  L+ LGDDLSR+N+ A +  ++AL
Sbjct: 128 GLSCLVILGDDLSRVNKEACLAGLRAL 154


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,061,381
Number of Sequences: 237096
Number of extensions: 1770392
Number of successful extensions: 2917
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2914
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)