Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30088
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical pr... 34 0.096
Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical pr... 29 2.7
X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein ( C.ele... 29 2.7
X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determinati... 29 2.7
U64842-10|AAB37080.1| 402|Caenorhabditis elegans Hypothetical p... 29 2.7
U41025-3|AAA82348.1| 244|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z66562-3|CAD44123.1| 485|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z66562-1|CAA91464.1| 519|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 28 4.8
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 28 4.8
U80031-6|AAB37618.2| 491|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical pr... 27 8.4
U53340-4|AAA96209.2| 445|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z93393-4|CAB07699.1| 360|Caenorhabditis elegans Hypothetical
protein Y48E1B.3 protein.
Length = 360
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/113 (28%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = +1
Query: 238 RQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSI-SAISLDLRSRIIEWLYR 414
++H+ + +R LN+ P ++ +T+R TI F+++ LD+LG + + ++ + R I+W+Y
Sbjct: 30 KKHIGFLIRHLNVFPQPYNTLETSRNTIFLFAISSLDLLGELDNLLTPERRQAYIDWIYG 89
Query: 415 LQVHPDKETGDMSLCGFQGSSTINIRLDPDNNQFRCGHLAMTYTGSVYTAGVG 573
LQ + ++CGF+GS + +N+ + +LA TY+ + A +G
Sbjct: 90 LQF------TNGNVCGFRGSHSC------ENSGYDEANLAQTYSALLSLAILG 130
>Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical
protein F23B12.6 protein.
Length = 401
Score = 33.9 bits (74), Expect = 0.096
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +1
Query: 238 RQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDLRSRIIEWLYRL 417
++H Y +R+L PSS ++ D +R + Y+ V L +L + I D+ II +L
Sbjct: 64 QKHASYLLRYLKNCPSSYATLDASRSWMCYWGVNALKILD--AEIPNDVIENIIVFLKSC 121
Query: 418 QVHPD 432
+ HP+
Sbjct: 122 E-HPE 125
>Z68213-2|CAA92437.1| 388|Caenorhabditis elegans Hypothetical
protein C01F6.4 protein.
Length = 388
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +1
Query: 223 KDMAHRQHVKYFMRFLNILP------SSLSSHDTTRVTIAYFSVAGL 345
+D+ HR +++M F LP ++ S+H T+ + YF++ G+
Sbjct: 147 QDLIHRDEFRFYMYFRQFLPNPDPNCTAFSNHYTSLLHTLYFNIPGM 193
>X64963-1|CAA46126.1| 388|Caenorhabditis elegans protein (
C.elegans gene fem-3. ).
Length = 388
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +1
Query: 223 KDMAHRQHVKYFMRFLNILP------SSLSSHDTTRVTIAYFSVAGL 345
+D+ HR +++M F LP ++ S+H T+ + YF++ G+
Sbjct: 147 QDLIHRDEFRFYMYFRQFLPNPDPNCTAFSNHYTSLLHTLYFNIPGM 193
>X64962-1|CAA46125.1| 388|Caenorhabditis elegans sex determination
protein protein.
Length = 388
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = +1
Query: 223 KDMAHRQHVKYFMRFLNILP------SSLSSHDTTRVTIAYFSVAGL 345
+D+ HR +++M F LP ++ S+H T+ + YF++ G+
Sbjct: 147 QDLIHRDEFRFYMYFRQFLPNPDPNCTAFSNHYTSLLHTLYFNIPGM 193
>U64842-10|AAB37080.1| 402|Caenorhabditis elegans Hypothetical
protein F25B4.1 protein.
Length = 402
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 457 CGFQGSSTINIRLDPDNNQFRCGHLAMTYTGSVYTAGVG 573
CG+ G + I +DP + L + GSV AG+G
Sbjct: 217 CGYTGEDGVEISVDPTKAEQLVERLLASQAGSVKLAGLG 255
>U41025-3|AAA82348.1| 244|Caenorhabditis elegans Hypothetical
protein C01C4.2 protein.
Length = 244
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 231 GSSSARKIFHEIFEYFAF 284
GS + R IFH +FEYF F
Sbjct: 224 GSLNLRLIFHSVFEYFTF 241
>Z66562-3|CAD44123.1| 485|Caenorhabditis elegans Hypothetical
protein F42E11.2c protein.
Length = 485
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Frame = -3
Query: 205 LLYVNCFGLLSTINYCNFN*NLSLFINMNSIHI*K----ISTQFIS*F--LIVSRTIFNF 44
++ V CF +L + N + N + I++NSI K IST IS F ++ T+
Sbjct: 89 IISVLCFFMLGVCLFANEHVNRGMSISINSIINTKKSYQISTAQISQFQEAALNTTVHLK 148
Query: 43 NLETTKNPKSKRT 5
NLE T + +SK+T
Sbjct: 149 NLEDTVHVESKKT 161
>Z66562-1|CAA91464.1| 519|Caenorhabditis elegans Hypothetical
protein F42E11.2a protein.
Length = 519
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Frame = -3
Query: 205 LLYVNCFGLLSTINYCNFN*NLSLFINMNSIHI*K----ISTQFIS*F--LIVSRTIFNF 44
++ V CF +L + N + N + I++NSI K IST IS F ++ T+
Sbjct: 89 IISVLCFFMLGVCLFANEHVNRGMSISINSIINTKKSYQISTAQISQFQEAALNTTVHLK 148
Query: 43 NLETTKNPKSKRT 5
NLE T + +SK+T
Sbjct: 149 NLEDTVHVESKKT 161
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 590 FSTGHRPTPAVYTDP-VYVIARWPHRN*LLSGSSLMFIVEEPWKPHSDMSPVSLSGCT 420
F T H PT + P V R H N +GS + I+ W P +S V LS C+
Sbjct: 51 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICS 108
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 590 FSTGHRPTPAVYTDP-VYVIARWPHRN*LLSGSSLMFIVEEPWKPHSDMSPVSLSGCT 420
F T H PT + P V R H N +GS + I+ W P +S V LS C+
Sbjct: 51 FLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICS 108
>U80031-6|AAB37618.2| 491|Caenorhabditis elegans Hypothetical
protein B0554.7 protein.
Length = 491
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 454 LCGFQGSSTINIRLDPDNNQFRCGHLAMTYTGSVYTAGVG 573
LCGF S ++I P + F + MTY +VY G G
Sbjct: 259 LCGFNASCFMSII--PTSMHFNQNNFRMTYIPAVYGLGAG 296
>Z81118-3|CAB03325.1| 346|Caenorhabditis elegans Hypothetical
protein T10G3.2 protein.
Length = 346
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 246 RKIFHEIFEYFAFVSIITRYYKSYNSIFLCCR 341
RKIFH +F F F S++ YY S + FL R
Sbjct: 47 RKIFHPMFS-FCFFSLLLLYYSS--TTFLAIR 75
>U53340-4|AAA96209.2| 445|Caenorhabditis elegans Hypothetical
protein F02E8.2a protein.
Length = 445
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/89 (25%), Positives = 38/89 (42%)
Frame = -1
Query: 447 VARFLIRMYLKPIQPFNNPGSQIKRYC*YGS*DIQAGNREICYCNSCSIV***RRRQNIQ 268
V RF++ ++ + P GS KR S D NR++ Y C +V +
Sbjct: 193 VKRFILLIWFVALLPSIFIGSMFKRV----SQDFCGFNRQMTYIGRCDLV----TSPDSF 244
Query: 267 KSHEIFYVLTMSHILVSFVIHYCTLTVLG 181
+ +T++ +L F I YC +LG
Sbjct: 245 FRYPFESAITITFVLPLFFIIYCYFRILG 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,151,313
Number of Sequences: 27780
Number of extensions: 294447
Number of successful extensions: 654
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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