Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30088
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta ... 48 4e-06
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 31 0.63
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 29 1.9
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont... 29 1.9
At3g42725.1 68416.m04461 expressed protein 29 3.4
At5g61700.1 68418.m07741 ABC transporter family protein ABC fami... 28 4.4
At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profi... 28 4.4
At1g51790.1 68414.m05836 leucine-rich repeat protein kinase, put... 28 4.4
At1g31090.1 68414.m03806 F-box family protein contains Pfam PF00... 28 4.4
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa... 28 5.9
At2g33020.1 68415.m04047 leucine-rich repeat family protein cont... 27 7.8
At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplas... 27 7.8
>At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta
subunit (GGT-IB) nearly identical to GI:11878247
Length = 375
Score = 48.4 bits (110), Expect = 4e-06
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = +1
Query: 241 QHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDLRSRIIEWLYRLQ 420
+H+ Y +LP S + R+T+A+F ++GL LG+ + D+ + +W+ Q
Sbjct: 39 RHLMYLEMMYELLPYHYQSQEINRLTLAHFIISGLHFLGARDRVDKDV---VAKWVLSFQ 95
Query: 421 VHPDKETG--DMSLCGFQGSSTINIRLDPDNNQFRCG-HLAMTY 543
P D GF GS + +D + + G HLA TY
Sbjct: 96 AFPTNRVSLKDGEFYGFFGSRSSQFPIDENGDLKHNGSHLASTY 139
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 497 SSLMFIVEEPWKPHSDMSPVSLSGCT*SLYNHSII--LDLRSRDIAD 363
SSL + E WKP +S ++L C H ++ DLR D++D
Sbjct: 329 SSLQVLSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSD 375
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 250 LRADDEPYPCFLRYSLLYVNCFGLLSTIN 164
L D PY CF L++ +CFGL IN
Sbjct: 271 LNGDRSPYACFQCDFLIHKDCFGLPRLIN 299
>At1g45616.1 68414.m05200 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to disease resistance
protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
Length = 994
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +1
Query: 352 LGSISAISLDLRSRIIEWLYRLQVHPDKETGDMSLCGFQG-----SSTINIRLDPDNNQF 516
L SI + +++ ++ WL+RL + + SL GF G S + + LD +N F
Sbjct: 523 LSSIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSLIGFNGSLKALSGSKIVMLDLSSNAF 582
Query: 517 RCGHLAMTYTGSVYTAG 567
+ G L M G Y G
Sbjct: 583 Q-GPLFMPPRGIQYFLG 598
>At3g42725.1 68416.m04461 expressed protein
Length = 202
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = -3
Query: 226 PCFLRYSLLYVNCFGLLSTINYCNFN*NLSLFINMNSIHI*KISTQFIS*FLIVSRTIFN 47
P L + L V+ L+S+ + + + S FI ++H+ ++ QFI+ ++ SR +
Sbjct: 41 PTSLGLAFLAVSLVSLISSFGSASSHQSRSCFIARITLHVSSLTGQFIAVLMLFSREKQS 100
Query: 46 FN-LETTKNPKSKR 8
+ L +T++P+ +
Sbjct: 101 LSLLISTRDPREAK 114
>At5g61700.1 68418.m07741 ABC transporter family protein ABC family
transporter, Entamoeba histolytica, EMBL:EH058
Length = 888
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 268 LNILPSSLSSHDTTRVTIAYFSVAGLDVLGS-ISAISLDLRSRIIEWLYRLQVHP 429
L L SS+ S T IAY V G +LGS + ++ +S EW+ ++++P
Sbjct: 393 LAFLVSSIFSKVKTVTVIAYILVYGTGLLGSFLFQKMIETQSFPEEWILAMELYP 447
>At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profile:
PF05669 SOH1
Length = 196
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 196 RTIMNNEGNKDMAHRQHVKYFMRFLN 273
RT M + NK++AHRQ Y+ + N
Sbjct: 99 RTAMAHPANKELAHRQQFYYWKNYRN 124
>At1g51790.1 68414.m05836 leucine-rich repeat protein kinase,
putative smilar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 881
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 351 DIQAGNREICYCNSCSIV***RRRQNIQKSHEIFYVLTMSHILVSFVIHYCTLTVL 184
D +GN IC N+C V R ++N S I V +++ +L+ F+I +L
Sbjct: 484 DSFSGNPSICSANACEEVSQNRSKKNKLPSFVIPLVASLAGLLLLFIISAAIFLIL 539
>At1g31090.1 68414.m03806 F-box family protein contains Pfam
PF00646: F-box domain
Length = 311
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -2
Query: 497 SSLMFIVEEPWKPHSDMSPVSLSGCT*SLYNHSIILDLRSRDIADMDPKTSRPATEKYAI 318
SSL+ + K D P S + LY +I + + D+ + P+T +YAI
Sbjct: 85 SSLVVAADSHMKFSEDKRPRYYSYASGLLYFPNIRISNHNDDVVRV---ICNPSTRQYAI 141
Query: 317 VTLVVSCDDRDEGKIFKN 264
+ + RD G++F+N
Sbjct: 142 LPPDLRTRYRDSGRLFRN 159
>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
Length = 531
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 238 RQHVKYFMRFLNILPSSLSSHDTTRVTIAYFSVAGLDVLGSISAISLDLRSRIIEWLYRL 417
R +++ + ++ + S + S + T T+A V G V GS A +L R + + R
Sbjct: 33 RNGLRHDRKTVSTVTSDVGSVNITGDTVADVIVVGAGVAGSALAYTLGKDKRRVHVIERD 92
Query: 418 QVHPDKETGDM 450
PD+ G++
Sbjct: 93 LSEPDRIVGEL 103
>At2g33020.1 68415.m04047 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611
Length = 864
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 361 ISAISLDLRSRIIEWLYRLQVHPDKETGDMSLCGFQGSSTINIRL 495
I S ++ +I EWL+ L + + S GFQGS+ + + L
Sbjct: 405 IDITSNQIKGKIPEWLWTLPQLSFVDISNNSFNGFQGSAEVFVNL 449
>At1g07810.1 68414.m00846 calcium-transporting ATPase 1, endoplasmic
reticulum-type (ECA1) identical to SP|P92939
Calcium-transporting ATPase 1, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 1061
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 532 LDG-RIEIDCYPDPVLCLSLRSLGSRIVTCRPFPYQDVLEAYTT 404
LDG + E+D Y ++ SLR + + C F Y DV + T
Sbjct: 550 LDGSKRELDQYSRDLILQSLRDMSLSALRCLGFAYSDVPSDFAT 593
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,046
Number of Sequences: 28952
Number of extensions: 266531
Number of successful extensions: 654
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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