Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30087
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.2  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   4.8  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   6.3  
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera...    25   8.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   8.3  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = -3

Query: 428 SLTNKFT-LKIDLNTVSHNFKSLSQPP---GHDIEYILIIKCIE 309
           S++  F+ L+I L+  S NF ++ +PP   G D E I+I+K ++
Sbjct: 18  SMSGSFSSLQIALDESSSNFSTIYEPPDLSGLDAEMIVIVKNLQ 61


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 125 TNSLCGSVMLCCLFLPSMTPASVS 54
           TNS C SV+    ++PS + A++S
Sbjct: 507 TNSYCNSVLQLLSYVPSFSKAAIS 530


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 396 INFQCKFVCQADNIMS*HFNSNQIKSNQIKKFLFNINEKYILVERQKNYRQFTRTSLRPE 575
           +NFQ +    A N +    N+N++ S+Q    L N+ E   +  R+K++       L P+
Sbjct: 556 LNFQFEQDVDAFNALDGAANTNKLASDQDVDDLANLLETVEIGSRKKSFCTICMAELPPD 615


>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
           formyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 145 QVIQTGNISHCGFLVHW 195
           +  Q G I+H G +VHW
Sbjct: 140 EAAQQGKITHTGAMVHW 156


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 478 KSKNFYST*MKSTYLLNVKRT 540
           K +N YST M+ T  LNVK T
Sbjct: 559 KLQNAYSTVMEETAYLNVKNT 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,489
Number of Sequences: 5004
Number of extensions: 35466
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)