Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30087
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553...    27   8.5  
01_06_1722 - 39431480-39431626,39431760-39431882,39431986-394321...    27   8.5  

>06_03_0253 +
           18753901-18754278,18754873-18754968,18755167-18755376,
           18756028-18756093,18756379-18756576,18756616-18756810,
           18756968-18757014,18757147-18757234,18757331-18757681,
           18758593-18759123
          Length = 719

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 453 NSNQIKSNQIKKFLFNINEKYILVERQKNYRQFTRTSLRPEKNWQE 590
           N + I SN ++    N+N +      QK+Y +     + P+KN+ +
Sbjct: 590 NKSSIASNDVEMTRKNVNRQNEEAILQKSYDEVPNNKMDPQKNYAD 635


>01_06_1722 -
           39431480-39431626,39431760-39431882,39431986-39432131,
           39432249-39432457,39432539-39432633,39433307-39433369,
           39433828-39433905,39434009-39434125,39434496-39434567,
           39434675-39434776,39434874-39435048,39435171-39435226,
           39435887-39435967
          Length = 487

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 140 IIK*FTNSLCGSVMLCCLFLPSMT 69
           I+K  +NS CG  ++CCL + ++T
Sbjct: 340 IVKDASNSSCGLKLVCCLLICTLT 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,418,157
Number of Sequences: 37544
Number of extensions: 192930
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)