Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30087
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83122-8|CAF31484.1|  582|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z83122-8|CAF31484.1|  582|Caenorhabditis elegans Hypothetical
           protein R11A5.4b protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 79  GRNKQHSI---TDPHKLFVNYLIIKQVIQTGNISHCGFLVHWSRIM 207
           G+  QH +   TD  K+F N  + + +++     HC +   +SRI+
Sbjct: 523 GKYLQHWLDLKTDSRKIFQNQFVPRWMLKRRESRHCNYYTRFSRII 568


>Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 465 IKSNQIKKFLFNINEKYILVERQKNYRQFTRTSLRPEKN-WQET 593
           I+    KK+L     KY   +  ++Y+  TRT+ +P+   W  T
Sbjct: 342 IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKPDNTFWHPT 385


>Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 465 IKSNQIKKFLFNINEKYILVERQKNYRQFTRTSLRPEKN-WQET 593
           I+    KK+L     KY   +  ++Y+  TRT+ +P+   W  T
Sbjct: 342 IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKPDNTFWHPT 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,432,910
Number of Sequences: 27780
Number of extensions: 198164
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)