Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30087
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53780.1 68418.m06683 hypothetical protein contains Pfam prof...    28   5.4  
At5g19870.1 68418.m02363 expressed protein contains Pfam profile...    27   7.1  
At1g77320.1 68414.m09005 BRCT domain-containing protein contains...    27   9.4  

>At5g53780.1 68418.m06683 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 368 SLSQPPGHDIEYILIIKCIESDLY 297
           SLS PP  + +Y++ IK + SD+Y
Sbjct: 150 SLSYPPDQEDDYVVYIKFLCSDIY 173


>At5g19870.1 68418.m02363 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 276

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 101 MLCCLFLPSMTPASVSAYCQTGRELVRQCSELK 3
           M C L+ PS+ P     + + G+  +R CS++K
Sbjct: 197 MACMLWTPSLVPKDCFLHIEEGKHTIR-CSDVK 228


>At1g77320.1 68414.m09005 BRCT domain-containing protein contains
           Pfam profile PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 783

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 28  SSRPVWQ*ADTEAGVIEGRNKQHSITDPHKLFVNYLIIKQVIQTGNISHCGFLVHW 195
           S R V   ADT   ++E  +K      P ++    + + +   TGN S  G   HW
Sbjct: 670 SGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKTVSLNEQYNTGNHSVTGLSRHW 725


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,451,364
Number of Sequences: 28952
Number of extensions: 173225
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)