Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30086
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              29   1.6  
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_37145| Best HMM Match : ig (HMM E-Value=8e-07)                      29   2.8  
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         28   5.0  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 28   5.0  
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)          28   5.0  

>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 217 ARTTTAACSPTNCWRRSRNWPTLDSTRILLRRSS 318
           A+  T   +P +CW+  R  PT++  R+  RR+S
Sbjct: 46  AQLKTTTMAPHSCWKTIRPTPTINGFRMAGRRNS 79


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 177 HCCPPEELERRAESTHHYCGVFTDELLAP 263
           HC P + L +R  +T+HY   F++  + P
Sbjct: 35  HCLPAQALSQRKRNTNHYYWRFSNNTVTP 63


>SB_37145| Best HMM Match : ig (HMM E-Value=8e-07)
          Length = 323

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 428 DGRAGDXPVRRLEGRRAPPXRQVPVA*HYQYALGSVYEDLLSSILVESN 282
           D   GD P RR    R      VPV  HYQ ++ +V E   S +++E N
Sbjct: 46  DVLGGDFPCRRFIDLRITARCNVPVTSHYQGSVMNVAEG--SEVMLECN 92


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
 Frame = +3

Query: 93  IVESMSIPAEIHERNGKKYASVGSIL-PIHCCPPEELERRAESTHHYCGVFTDELLAPLE 269
           +V+S +I   ++   GK Y SV ++  P+    PE+   R   T HY    T  + A +E
Sbjct: 15  LVKSWAIDISLYTGLGK-YLSVNNLTKPVGIFIPEDTPYRRSPTEHYFIKPTHNISA-IE 72

Query: 270 ELAYVRLD-----ENTAEKVFINRAKRI 338
            + Y R +        + K+F +R KR+
Sbjct: 73  NIRYHRFNIPNSHSTVSIKLFPSRGKRL 100


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 205 DALRARTTTAACSPTNCWRRSRNWPT 282
           D LR  T  A C+  NC RRSR   T
Sbjct: 405 DRLRQATRGAVCNTENCVRRSRKLAT 430


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 27  SDLFSKKTAMSKRTVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCCPPEELE 203
           +D+ S    +  R  L +N+ G     +I  +  ++  +K     S LPI CC P + E
Sbjct: 30  ADVASDHHLIVARLKLKKNWTGGSSHNTITLKDSKKKEEKIPPADSDLPIECCAPTKEE 88


>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
          Length = 1703

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 452  DDAPALVDDGRAGDXPVRRLEGRRAPPXRQVP-VA*HYQYALGSVYEDLLSSILVESNVG 276
            D+  A +++ R G  P+             +P +   YQY+L + + +L  + + +SN  
Sbjct: 1318 DETEAKINESRRGYNPIAAHASVLFFSITDLPNIDPMYQYSL-TWFVNLFLNSIHDSNKS 1376

Query: 275  QFLERRQQFVGEH 237
            + LERR +++ +H
Sbjct: 1377 KILERRLRYLSDH 1389


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,563
Number of Sequences: 59808
Number of extensions: 253817
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)