Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30085
         (312 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   3.0  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    20   6.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    20   6.9  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    19   9.2  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    19   9.2  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    19   9.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 203 FVNVVNTTFATLKYVLAVEEEHL 135
           FVN  N +F +LKY +  E + +
Sbjct: 299 FVNRGNVSFNSLKYFVLDEADRM 321


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 186 YYFCNT*ICVSCRRRTP*SSVTTNIVFKFRKLVKLIL 76
           YY CNT I +      P     T++   F  ++K ++
Sbjct: 154 YYVCNTTIFLIFHSVLPIKRFFTSLGIAFDNIMKNLI 190


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 218 IFRLSFVNVVNTT 180
           IF+ +F N+VN T
Sbjct: 80  IFQKNFTNIVNLT 92


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 88  KVNFNHI*DLRKPMKIS*ILYSVQSNTD 5
           K N+  + DL+K      +L SV  N D
Sbjct: 83  KDNYRKVTDLKKRFPKLKVLLSVGGNAD 110


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 237 SCSINQRPLLYC 272
           SCS  ++ L+YC
Sbjct: 29  SCSFPKKKLVYC 40


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 237 SCSINQRPLLYC 272
           SCS  ++ L+YC
Sbjct: 25  SCSFPKKKLVYC 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,513
Number of Sequences: 336
Number of extensions: 1344
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5730534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)