Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30085
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    24   4.6  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   4.6  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    23   8.1  

>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 300 FIIRFLTQHHNIIRDVD*SNMMSQ*MRYLSAELRQRS--EYYF 178
           +I+       NI++D+D  +++SQ +  + + L +R   EY F
Sbjct: 65  YIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAF 107


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 218 IFRLSFVNVVNTTFATLKYVLAVEEEHLSH 129
           +F     +  N+ F+T  ++ AVE  HL+H
Sbjct: 140 LFESIVPDTTNSPFSTEAFLQAVENGHLNH 169


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
 Frame = -1

Query: 312 QQINFII---RFLTQHHNIIR 259
           QQ+N +    RFLT++HN++R
Sbjct: 107 QQLNSLSTSERFLTKYHNLVR 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,422
Number of Sequences: 5004
Number of extensions: 20909
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)