Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30085
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199...    28   1.8  
12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451           27   2.3  
11_01_0584 - 4640982-4641439,4641541-4642273                           27   2.3  
10_03_0047 - 7358656-7359113,7359216-7359948                           27   2.3  
09_04_0293 - 16442989-16443446,16443548-16444280                       27   2.3  
07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992     27   2.3  
03_05_0129 - 21102892-21103349,21103452-21104184                       27   2.3  
02_01_0253 + 1664217-1664378,1664739-1664999,1665116-1665622,166...    26   5.4  

>01_06_1473 -
           37619415-37619561,37619649-37619723,37619800-37619919,
           37620074-37620127,37620204-37620426,37620506-37620585,
           37620675-37620764,37620847-37620960,37621192-37621272,
           37621383-37621490,37621677-37621722,37621802-37621899,
           37621975-37622148,37622456-37622548,37623229-37623285,
           37623399-37623438,37623567-37623685,37624179-37624298,
           37624723-37624815,37624940-37625251,37625325-37625444,
           37625545-37625658,37625731-37625910,37625996-37626110,
           37626195-37626358,37626584-37626769,37626888-37626978,
           37627089-37627153,37627223-37627297,37627410-37627493,
           37627575-37627742,37628160-37629293
          Length = 1579

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 117 SWSQMTKVFFFDS*HIFKCCKSSIHYVDEAQPKDISFIVTSCSINQRPLLYCDVGLKIL 293
           SW  ++K     +      CK  +  VD   PKDIS ++TS ++   P++   V LK +
Sbjct: 524 SWLSISKFLACPATQRVSWCKFEVT-VDS--PKDISVLMTSTTLEVPPVVVAAVNLKTI 579


>12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451
          Length = 537

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 178 LQHLNMC*LSKKNTLVICDHE 116
           +QH N   ++ +N LVICDH+
Sbjct: 329 MQHRNRHHITTRNVLVICDHD 349


>11_01_0584 - 4640982-4641439,4641541-4642273
          Length = 396

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 178 LQHLNMC*LSKKNTLVICDHE 116
           +QH N   ++ +N LVICDH+
Sbjct: 188 MQHRNRHHITTRNVLVICDHD 208


>10_03_0047 - 7358656-7359113,7359216-7359948
          Length = 396

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 178 LQHLNMC*LSKKNTLVICDHE 116
           +QH N   ++ +N LVICDH+
Sbjct: 188 MQHRNRHHITTRNVLVICDHD 208


>09_04_0293 - 16442989-16443446,16443548-16444280
          Length = 396

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 178 LQHLNMC*LSKKNTLVICDHE 116
           +QH N   ++ +N LVICDH+
Sbjct: 188 MQHRNRHHITTRNVLVICDHD 208


>07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992
          Length = 537

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 178 LQHLNMC*LSKKNTLVICDHE 116
           +QH N   ++ +N LVICDH+
Sbjct: 329 MQHRNRHHITTRNVLVICDHD 349


>03_05_0129 - 21102892-21103349,21103452-21104184
          Length = 396

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 178 LQHLNMC*LSKKNTLVICDHE 116
           +QH N   ++ +N LVICDH+
Sbjct: 188 MQHRNRHHITTRNVLVICDHD 208


>02_01_0253 +
           1664217-1664378,1664739-1664999,1665116-1665622,
           1665746-1665802
          Length = 328

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 117 SWSQMTKVFFFDS*HIFKCCKSSIHYV--DEAQPKDISFIVTSCSINQRPLLYCD 275
           SW ++T   +F + H  +     + Y   ++   +D  F+VTS  +N   +L C+
Sbjct: 97  SWRRITTADYFVAAHSRRRPLQLLGYTGPNDESLRDDEFLVTSAPVNAETMLICN 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,979,506
Number of Sequences: 37544
Number of extensions: 108835
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)