Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30085
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.37 
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              20   8.0  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              20   8.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.37
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 148 STANTYLSVAKVVFTTLTKLSRKISHLL*HH 240
           ST  + + +    +  L K +R ++HLL HH
Sbjct: 738 STIQSLMKLKSPEWKDLAKKARSVNHLLTHH 768


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 50 DENIMNFVQC 21
          DEN++ F++C
Sbjct: 56 DENVLLFIEC 65


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 50 DENIMNFVQC 21
          DEN+ ++V+C
Sbjct: 56 DENVQSYVEC 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,481
Number of Sequences: 438
Number of extensions: 1424
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)