Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30085
         (312 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43190.1 68416.m04558 sucrose synthase, putative / sucrose-UD...    29   0.87 
At1g21230.1 68414.m02653 wall-associated kinase, putative simila...    27   3.5  
At3g52115.1 68416.m05720 hypothetical protein                          25   8.1  

>At3g43190.1 68416.m04558 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           SP|P49040 Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
           glucosyltransferase) {Arabidopsis thaliana} (SUS1)
          Length = 808

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 173 TLKYVLAVEEEHLSHL*PRTLYSNFAN**S*F*SYLGLAKTDENIMNFVQ 24
           TL++ L   EE+L  L P TLYS F +         G   T E ++N ++
Sbjct: 205 TLQHNLRKAEEYLMELKPETLYSEFEHKFQEIGLERGWGDTAERVLNMIR 254


>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 733

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -3

Query: 133 VICDHEHCIQISQTSKVNFNHI*DLRKPMKIS*ILYSVQSNTD 5
           + C+ +    +S    +NFNH   LR  +  S + Y  Q+N D
Sbjct: 58  ITCEEDKPNVLSNIEVLNFNHSGQLRGLIPRSTVCYDQQTNND 100


>At3g52115.1 68416.m05720 hypothetical protein
          Length = 588

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 109 IQISQTSKVNFNHI*DLRK 53
           IQI++TSK +F H+  +RK
Sbjct: 503 IQIAETSKKSFKHVESVRK 521


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,003,312
Number of Sequences: 28952
Number of extensions: 98913
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)