Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30084
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    27   2.4  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   4.2  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   5.5  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   7.3  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   7.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   9.7  

>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 298 RLKNSYHCY*LTCFICLYCVRQ 363
           R  +S+HC+ L CF  + CV Q
Sbjct: 19  RYFHSFHCFFLLCFTVMLCVVQ 40


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -2

Query: 500 LCRIHESCFTNCDTYDSFSEIIITIALSSRQPKHVTSTVYLIFGYSCL 357
           +C ++E C   C  YD F          S QP H+     +    SC+
Sbjct: 301 ICHLYERCLITCALYDEF--WFRYARWMSAQPDHLNDVSIIYERASCI 346


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 148 SFHEELRSKTFQNIKVMTHFSFDVLA*INKTQIITIY 258
           +F   L+S  F+ I+++   SFD L  +    + TIY
Sbjct: 181 AFESFLKSFYFKYIQIIEALSFDALLFVKSQMVSTIY 217


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 284 WYFPFYVRMYIVIICVLFIYARTSNEKCVITFIFWKVLER 165
           W+F FY  +Y  I  V    A T    C++T  + K + R
Sbjct: 235 WFF-FYTLLYPWIALVSAFVAETMTLCCIVTIFYDKNVNR 273


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   RERLSTVKHLVTAIQELLNSRAATSVDN 85
           R+++ T+K+L+  +QE+    A    DN
Sbjct: 310 RKKIQTIKNLIPVLQEMDKEHARIDFDN 337


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 184 NIKVMTHFSFDVLA*INKTQIITIYIRT 267
           +I  + HFSF VL  +   QI+T++ +T
Sbjct: 255 HITGVKHFSFVVLQSLQSIQIVTLFPKT 282


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 198  DTFLIRCSSVNK*NTNYNYIHTYVK 272
            DT LIR  S  K N  YNY    VK
Sbjct: 1147 DTILIRSDSEGKGNRTYNYRVCMVK 1171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,936
Number of Sequences: 5004
Number of extensions: 48244
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)