Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30084
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ...    30   1.6  
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ...    30   1.6  
At1g08400.1 68414.m00929 chromosome structural maintenance prote...    29   2.1  

>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
           Helicase [Arabidopsis thaliana] GI:11121447; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 620

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = -1

Query: 201 CHYFYILESFGTKFLMERCGGVP*AEKNVRNVRLFLFSLLSTDVAAREFNNS*IAVT 31
           C    ILESFG +F +++C     A K+   V   L  L++T  A+R  N+S I +T
Sbjct: 309 CRRKKILESFGEEFPVQQCKKTCDACKHPNQVAHCLEELMTT--ASRRHNSSRIFIT 363


>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
           Helicase [Arabidopsis thaliana] GI:11121447; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 713

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = -1

Query: 201 CHYFYILESFGTKFLMERCGGVP*AEKNVRNVRLFLFSLLSTDVAAREFNNS*IAVT 31
           C    ILESFG +F +++C     A K+   V   L  L++T  A+R  N+S I +T
Sbjct: 402 CRRKKILESFGEEFPVQQCKKTCDACKHPNQVAHCLEELMTT--ASRRHNSSRIFIT 456


>At1g08400.1 68414.m00929 chromosome structural maintenance
           protein-related contains weak similarity to
           RAD50-interacting protein 1 [Homo sapiens]
           gi|11967435|gb|AAG42101
          Length = 804

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 412 LLDRAMVIIISEKESYVSQFVKQLS 486
           L+DRAM++  S KE++VS  V+ LS
Sbjct: 342 LIDRAMLVSCSAKEAWVSAMVQMLS 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,152,031
Number of Sequences: 28952
Number of extensions: 222889
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)