Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30082
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 31 0.57
04_02_0011 - 8513471-8513673,8513815-8513869 29 2.3
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858... 28 4.0
09_04_0350 + 16899076-16900164 28 4.0
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300... 28 4.0
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802 27 5.3
12_02_0731 + 22619005-22619095,22619630-22619931 27 7.1
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333... 27 7.1
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 27 9.3
05_04_0258 + 19490256-19491569 27 9.3
>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 239 LVVQSRQVLPMVVHGAHCGYQGADAIHGGIQGLT 138
L ++ RQ P+V+HG C ++G D I GI G T
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGDKI--GIVGRT 1265
>04_02_0011 - 8513471-8513673,8513815-8513869
Length = 85
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 193 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPT-LPYCNLGECSATP 330
AP T + C+D T K +C+ + C L YCN C+ +P
Sbjct: 33 APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNF--CANSP 77
>11_03_0107 +
10084234-10084348,10084830-10084834,10085351-10085803,
10086143-10086267,10087282-10087345,10087452-10087508,
10088475-10088485,10089923-10090802
Length = 569
Score = 27.9 bits (59), Expect = 4.0
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 229 CTTKQVCTKVGGIQRA--CLDPTL--PYCNLGECSATPAEXCEPASGASVAPTA*YSILK 396
C+T + T +G I A P+L P CN +A + CEP GA++ S+L
Sbjct: 31 CSTVEQATGLGYIVLALQAYTPSLHPPPCNPAATTAAASTTCEPVRGANL------SLLL 84
Query: 397 YNLYFSP 417
LY P
Sbjct: 85 LGLYLVP 91
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 4.0
Identities = 21/41 (51%), Positives = 22/41 (53%)
Frame = -1
Query: 201 ARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDS 79
AR P V SG + WR R D A AS TAG GGR R S
Sbjct: 71 ARRPWLV-SSGAEAWRR-RGDAASA-ASATAGGAGGRSRRS 108
>06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,
3001969-3002274,3002365-3002579,3003047-3003341,
3003487-3003651,3003745-3004341,3004855-3004941,
3005022-3005342,3006218-3008242
Length = 1474
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 239 LVVQSRQVLPMVVHGAHCGYQGADAIHGGIQGLT 138
L ++ RQ P+V+HG C ++G I GI G T
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGHKI--GIVGRT 1265
>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
Length = 320
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 198 RSPLRVPGSGCDPWRYPRVDCAIVPASPTAG 106
R P ++P P+ +PR D A+ P+SP G
Sbjct: 40 RQPAKIPA----PFVWPRADVALPPSSPPTG 66
>12_02_0731 + 22619005-22619095,22619630-22619931
Length = 130
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 253 KVGGIQRACLDPTLPYCNLGECSATPAEXCEPASGASVAPTA*YSILKYNLYFSPRKYIT 432
+ G ++ + L G C A CEP G S++P IL+ YF K I
Sbjct: 62 RAGKLKTHLTETKLEATGAGSCMAKLRVECEPEDGGSLSPEKQKIILEG--YFGMLKMIE 119
Query: 433 N 435
N
Sbjct: 120 N 120
>01_06_1227 +
35531840-35532516,35532665-35532836,35533158-35533357,
35533467-35533622,35536878-35537235,35537407-35537418
Length = 524
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 90 TCHRWCRRLGRLEQWRSQPLDTSMDR 167
TC R RR ++WR QP D SM R
Sbjct: 201 TCMRNGRRDDTYQKWRWQPKDCSMPR 226
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +1
Query: 196 PCTTIGSTCLDCTTKQVCTKVGGIQRACLDPTLPYCNLGECSATPAEXCEPASGA 360
P ++ +D T +C + G + P + +C++ + A P E SGA
Sbjct: 563 PFLSLAGGNIDVGTGSICFHING--KFEFQPRMEHCSMNQVRAKPVEYSRVRSGA 615
>05_04_0258 + 19490256-19491569
Length = 437
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = +1
Query: 190 WAPCTT--IGSTC--LDCTTKQV-CTKVGGIQRACLDPTLPYCNLGECSATP 330
W C T + S+ + C +K TK GG +C P C G CS P
Sbjct: 73 WVDCDTGYVSSSYARVPCGSKPCRLTKTGGCFNSCFGAPSPACLNGTCSGFP 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,281,155
Number of Sequences: 37544
Number of extensions: 264866
Number of successful extensions: 813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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