Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30082
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   0.89 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   2.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 6   NLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQ---WRSQPLDTSMDRIRS 176
           ++  +NK+     + +MH    +      C R C RLGR+++   W     +    ++ S
Sbjct: 221 DIRIVNKDRRGELFYYMHQQIMA---RYNCERLCNRLGRVKRFINWHEPIPEAYFPKLDS 277

Query: 177 LV 182
           LV
Sbjct: 278 LV 279


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 156 RYPRVDCAIVPASPTAGTTGG 94
           ++P + CA  P+S    TT G
Sbjct: 345 KFPSLACAAEPSSDAVSTTSG 365


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 256 VGGIQRACLDPTLPYC 303
           V G   AC +P+L YC
Sbjct: 165 VTGKTTACFEPSLDYC 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,192
Number of Sequences: 438
Number of extensions: 2485
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)