Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30081
         (610 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0GWH4 Cluster: Lipopolysaccharide biosynthesis; n=2; C...    33   5.3  
UniRef50_A2EER3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.3  
UniRef50_A5B700 Cluster: Putative uncharacterized protein; n=1; ...    32   9.3  
UniRef50_Q4YH29 Cluster: Putative uncharacterized protein; n=3; ...    32   9.3  

>UniRef50_A0GWH4 Cluster: Lipopolysaccharide biosynthesis; n=2;
           Chloroflexus|Rep: Lipopolysaccharide biosynthesis -
           Chloroflexus aggregans DSM 9485
          Length = 349

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = +2

Query: 428 LNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVT 544
           LNTD ++ +A QKF E +L    ++ +++  QA++DF++
Sbjct: 159 LNTDFQESVAAQKFFE-DLIAPYQADVDQARQALIDFLS 196


>UniRef50_A2EER3 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 663

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = -1

Query: 610 NIQFVKKILLSYIFSLSID*NFCYKI*N-GLITLFDCTF--CTNSQLYLKEFL*SNFL 446
           NI+FV  +L +Y F   +D   CY   N     LF  TF  C++  LY+ EF+ +N L
Sbjct: 244 NIEFVTYLLNNYTFD--VDLRICYNYNNLQSFLLFIDTFKLCSSGLLYISEFMGNNIL 299


>UniRef50_A5B700 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 507

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +2

Query: 428 LNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDVAQKNLFDKL 604
           L  D+EK+    + LE +L   A  TIEERN+     +   S   + +D+ + NL  KL
Sbjct: 401 LQHDLEKERGKCRLLETQLQ-EAIQTIEERNKEQDSLIETFSEERERRDIEEANLRKKL 458


>UniRef50_Q4YH29 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 720

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 392 LKKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILD 535
           LKKIY+ +  + +N DI+KK  ++K L     I+ K +  + N   LD
Sbjct: 227 LKKIYDDFRTSAINDDIDKKNNIEKLLLELTPINEKDSHSKNNLKTLD 274


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 344,537,930
Number of Sequences: 1657284
Number of extensions: 5669909
Number of successful extensions: 15854
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15813
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)