Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30081
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   3.7  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   3.7  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 401  IYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFV 541
            I+  Y L ++  DI  +  + K  ++EL +   S   + NQ + DF+
Sbjct: 1201 IFQAYLLKEMPNDIVSQFEMLKSKQIELTVQMASYEGDLNQNLCDFL 1247


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 316 FSCPFSLVSFCHLFQASFFPWPLIFLTSCLPS 221
           F+  F+ V+F  +  + +F W L+FL   LP+
Sbjct: 722 FAQTFAFVTFNKVCTSQYFMWYLVFLPLVLPN 753


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 389 LLKKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQT 568
           LL    N      LN DI +        +V+  +   +++EE+N    +FVT IS   QT
Sbjct: 361 LLSIPLNNVPSKSLNDDITQDELNSSNADVDEEVIETTSLEEKNVDNQEFVTSISNGNQT 420


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 425 DLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDV 577
           D    +   IAL + + V  GI+ K+T +ERN+ I  F +K++      D+
Sbjct: 487 DKGLKLPPAIALVQSVVVPCGITNKTTDQERNE-IEGFCSKLADRLNAADI 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,067
Number of Sequences: 5004
Number of extensions: 27150
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)