Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30081
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41437| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.5e-29)        30   1.3  
SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  29   2.9  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    29   3.9  
SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)              28   5.1  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)                27   9.0  
SB_11001| Best HMM Match : Filaggrin (HMM E-Value=4.4)                 27   9.0  

>SB_41437| Best HMM Match : Cu2_monooxygen (HMM E-Value=1.5e-29)
          Length = 225

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 337 HLLLYFGFSCPFSLVSFCHLFQASFFPWPLI 245
           H +L FG S P S   F ++FQ   + WP I
Sbjct: 98  HHMLLFGCSTPASKEGFWYVFQRLLYSWPSI 128


>SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 900

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 368 NS*MSIFLLKKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEE 514
           NS  +   L  I  GY + D+  DI  + +L   L++ LG  A+ST+ +
Sbjct: 639 NSRFASPFLSDIMEGYSILDMPKDIGLQQSLPGLLDLLLGAKAESTVRK 687


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 201 QAGKNMGEGRQEVKKIRGQGK-KEA*KR*QKETSEKGQEK 317
           + GKN    R++ +K+  +GK K+  KR + ET+ +GQE+
Sbjct: 73  EEGKNRNTRRRQEQKLPEEGKNKKHQKRARTETTRRGQEQ 112


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +2

Query: 443 EKKI-ALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDVAQKNLFD 598
           E+KI +L+K +E EL ++     + ++ A+    TKIS+ TQ+    +K++FD
Sbjct: 792 EQKIESLEKKVE-ELELNQDDHAQSQSTALRKTETKISILTQSTKKQEKDIFD 843


>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
          Length = 327

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 458 KQFSFLCQYSNQLNRSHCRFFSTRISTFKNS 366
           KQF FLCQ   +L + H  F ST ++  K+S
Sbjct: 35  KQFGFLCQTFEELFQEH--FSSTMVNEMKDS 63


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 383  IFLLKKIYNGYGLTDLNTDIEKKIALQKF 469
            +F L ++++GYG TDL++  E++IA   F
Sbjct: 2053 LFALMRLFSGYGCTDLSS--EERIAAANF 2079


>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
          Length = 718

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -1

Query: 400 FFQQEYRHSR-IH*NPGLY-QYPHLLLYFGFSCPFSLVSFCHLFQASFFPWPLIFLTSCL 227
           F    Y+H   +H  P ++  YP  L+   +  PF ++++   F    +P P + +T  +
Sbjct: 519 FMVNTYKHEESLHPVPFMFITYPVPLMVITYPVPFMVITYPVPFMVITYPVPFMVITYPV 578

Query: 226 P 224
           P
Sbjct: 579 P 579


>SB_11001| Best HMM Match : Filaggrin (HMM E-Value=4.4)
          Length = 136

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 219 GEGRQEVKKIRGQGKKEA 272
           GEG+++VK  RG+GK++A
Sbjct: 83  GEGKEKVKTRRGEGKRKA 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,525,311
Number of Sequences: 59808
Number of extensions: 171784
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)