Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30081
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73340.1 68414.m08489 cytochrome P450 family protein similar ...    31   0.79 
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains...    27   7.4  
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    27   7.4  

>At1g73340.1 68414.m08489 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana];
           contains Pfam profile: PF00067 cytochrome P450
          Length = 512

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +2

Query: 437 DIEKKIALQKFLEVELGISAKSTIEERNQAILDFV 541
           DI +K+A+   +   LG+S++S ++E +Q   DFV
Sbjct: 207 DICRKVAIHLMVNQLLGVSSESEVDEMSQLFSDFV 241


>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 520

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 380 SIFLLKKIYNGYGLTDLNTDIEKKIAL 460
           S+ +L K Y GYG+ D+N D+ K++ +
Sbjct: 400 SLKILLKNYLGYGVEDINGDVLKEMEM 426


>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 207 GKNMGEGRQEVKKIRGQGKKEA*KR*QKETSEKGQEKPK 323
           G++ G GR+E  + RG+  K   +R ++E  EKG++K K
Sbjct: 70  GEDKGRGRRERDRDRGKYLKRDRERRERE-KEKGRKKQK 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,622,084
Number of Sequences: 28952
Number of extensions: 127609
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)