Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30080
         (674 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O28851 Cluster: UPF0182 protein AF_1421; n=1; Archaeogl...    34   2.7  
UniRef50_Q8V3F2 Cluster: SPV144 ankyrin repeat protein; n=1; Swi...    33   4.8  
UniRef50_Q6ZR84 Cluster: CDNA FLJ46559 fis, clone THYMU3040126; ...    33   6.3  

>UniRef50_O28851 Cluster: UPF0182 protein AF_1421; n=1;
           Archaeoglobus fulgidus|Rep: UPF0182 protein AF_1421 -
           Archaeoglobus fulgidus
          Length = 880

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 165 INYLSFVYNLISVKFQDFNYNIVTNWNSV 251
           INY  F YNL  VK Q F+Y  V N+N +
Sbjct: 311 INYTLFAYNLHDVKLQKFDYWDVVNYNDI 339


>UniRef50_Q8V3F2 Cluster: SPV144 ankyrin repeat protein; n=1;
           Swinepox virus|Rep: SPV144 ankyrin repeat protein -
           Swinepox virus (SWPV)
          Length = 493

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +2

Query: 260 SNYRSCLYL--HSFKPRIIEIFGDT*SINHFNEHQTKIDFSFVVNRLCV*TTQ--AVSNQ 427
           +N + C YL   +  P II +FG+T  +   N H   I +  +   + + T Q      +
Sbjct: 263 NNEKMCSYLLKKNADPNIITVFGETCILTAINNHNKNILYKLLNYDIDINTIQNTLFKLE 322

Query: 428 SDI*NAMFNNYIYMYIIM*KVFVK 499
            DI N+  + Y Y  ++  + F+K
Sbjct: 323 QDIINSTIDTYYYNNLVKKEHFIK 346


>UniRef50_Q6ZR84 Cluster: CDNA FLJ46559 fis, clone THYMU3040126;
           n=1; Homo sapiens|Rep: CDNA FLJ46559 fis, clone
           THYMU3040126 - Homo sapiens (Human)
          Length = 303

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -2

Query: 589 LCI*VEVLLTRAINQSTYAIQNTCRFSKCIFHENFLHNYVHVNVIVKHCILNVALI*HSL 410
           +C+ V +     +   TY    TC +  CI+   ++H +V+V V +  CI       H  
Sbjct: 7   MCVYVHIYTCIYVYTHTYIYTYTCMYV-CIYSHTYIHTHVYVCVHIHICI-------HMY 58

Query: 409 CCLYT 395
            C+YT
Sbjct: 59  MCVYT 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,121,870
Number of Sequences: 1657284
Number of extensions: 8564274
Number of successful extensions: 17046
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17039
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)