Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30080
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.81 
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    27   3.3  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    26   4.3  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    25   7.6  

>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 502 IFHENFLHNYVHVNVIVKHCI 440
           +F  N  HNYV++N+I   CI
Sbjct: 61  LFSSNLKHNYVNLNIIFTSCI 81


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 135 KQFLIARYT*KKKLVVIEHFNCSELNDYSYST 40
           ++FL+  Y  K KL V+ H N   L    Y T
Sbjct: 138 RKFLLQHYKDKDKLTVLTHCNTGSLATSGYGT 169


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 673 FFPARNKFAIKIGDSHDEQYVLHKILVSL 587
           +FP  NK  I  G S+D++++L    + L
Sbjct: 446 YFPDENKLYIFGGQSYDQEFILDMCYIKL 474


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 165 INYLSFVYNLISVKFQDFNYNIV 233
           + Y+SF+Y+++  K +D   NIV
Sbjct: 324 VEYMSFIYHVLKKKNKDGGINIV 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,220
Number of Sequences: 5004
Number of extensions: 41083
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)