Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30080
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    30   1.7  
Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 549 FIALVNNTST*MHSDTKILCKTYCSSCESPILIA 650
           +I   +NT T  H        TYC SC +PIL A
Sbjct: 371 YICRTSNTQTLKHMRMGFNALTYCQSCINPILYA 404


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 549 FIALVNNTST*MHSDTKILCKTYCSSCESPILIA 650
           +I   +NT T  H        TYC SC +PIL A
Sbjct: 371 YICRTSNTQTLKHMRMGFNALTYCQSCINPILYA 404


>Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical
           protein Y70C5C.4 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
 Frame = -2

Query: 634 DSHDEQYVLHK----ILVSLCI*VEVLLTRAINQSTYAIQNTCRFSKCIFHENFLHNYVH 467
           DS+ E    +K    IL S+   V +  T  +   T +  +  +FS  + H  F+   V+
Sbjct: 6   DSYFESVEFYKQSTHILSSIQCPVNIFATYILLFKTPSSMSKVKFSMLVMHFTFVWLDVY 65

Query: 466 VNVIVKHCILNVALI*HSLCCLYTQPIYYETEIYFGLMLIKMVNRLSIAEYFDYPRFKRM 287
           ++++    +L  A +  +L  L    +    +IYFG+  + +V  +++  +F+  R+ R+
Sbjct: 66  LSILSIPYLLYSACLGRALGVLDYFQVPIPVQIYFGITSL-LVTAVAVLLFFE-ERYNRL 123


>Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical
           protein Y41E3.3 protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 56  SFNSLQLKCSITTNFFFYVYLAIKNCFKKTS 148
           S   + +  S+TT FF + Y+  K CF+K S
Sbjct: 486 SLGIVAIPISLTTLFFIWAYVWTKPCFEKVS 516


>AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical
           protein Y116A8C.5 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 556 AINQSTYAIQNTCRFSKCIFHENFLHNY 473
           AI  +T A +N C    CI   + LHNY
Sbjct: 26  AIGATTPATRNVCNTPACITLAHMLHNY 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,426,983
Number of Sequences: 27780
Number of extensions: 227535
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)