Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30072
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 235 2e-62
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 31 0.86
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069) 29 3.5
SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091) 27 8.0
SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014) 27 8.0
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 235 bits (575), Expect = 2e-62
Identities = 121/152 (79%), Positives = 133/152 (87%)
Frame = +1
Query: 67 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 246
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 64
Query: 247 AIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQ 426
AIYGLVVAVLI ++ + +Y LYK F+ LGAGL+V SGLAAGFAI IVGDA VRGTAQ
Sbjct: 65 AIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 122
Query: 427 QPKLFVGMILILIFAEVLGLYGLIVAIYLYTK 522
QP+LFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 123 QPRLFVGMILILIFAEVLGLYGLIVALILTTK 154
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Frame = +3
Query: 219 HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV-------HPLGCWFGCKILWSGCR 377
+ CR+ G C + R P C CPPG QRV +P C G
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRVCASDGLTYPSVCEMHRTACSLGIS 3039
Query: 378 FRHKHRGRC 404
+ K+RG C
Sbjct: 3040 IQAKYRGSC 3048
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 30.7 bits (66), Expect = 0.86
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -3
Query: 418 YHARXHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 248
YHA+ + +C ++P +L Q S C PGGHQ Q R RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 0.86
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 384 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 253
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 384 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 253
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 44 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 403 HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 269
++ +++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 219 HSCRHGGYYCHLRSGRGCPDCW 284
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
Length = 466
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +2
Query: 71 IQSTDPSLELWGRRLLSSSAPWELPMEL 154
I S D LELWG R LS+SA LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382
>SB_22858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1404
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +1
Query: 124 FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 291
+S + A G + G+ ++V+ + + +I V+ IIA+ G++VAV++A A+
Sbjct: 786 YSVIVAVVGVIIAVVGVI-IAVVGVIIAVVGVIIAVVGVIIAVVGVIVAVVVATAV 840
>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
Length = 497
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 279 NQDSHDQTVDGNNTRHDDRNDRLHDQL 199
N D+ D D NN DD ND +D +
Sbjct: 140 NDDNDDNNNDSNNNSDDDGNDDTNDYI 166
>SB_37028| Best HMM Match : Ice_nucleation (HMM E-Value=0.0014)
Length = 916
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 492 TYRRHLPVHKINALEHTPLPSPV 560
TY +H+ +HK N ++T P PV
Sbjct: 729 TYTQHIVMHKKNPCQYTMYPMPV 751
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,908,452
Number of Sequences: 59808
Number of extensions: 457971
Number of successful extensions: 1392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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