Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30072
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipi... 199 9e-52
At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipi... 199 9e-52
At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipi... 199 9e-52
At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipi... 199 9e-52
At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipi... 199 9e-52
At4g32530.1 68417.m04631 vacuolar ATP synthase, putative / V-ATP... 91 6e-19
At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C su... 91 6e-19
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 32 0.23
At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarit... 30 1.2
At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta... 30 1.2
At2g41190.1 68415.m05087 amino acid transporter family protein l... 29 2.1
At4g36550.1 68417.m05190 U-box domain-containing protein low sim... 29 2.8
At3g04570.1 68416.m00485 DNA-binding protein-related contains Pf... 28 5.0
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:... 28 5.0
At5g38030.1 68418.m04581 MATE efflux family protein similar to r... 27 6.5
At2g34910.1 68415.m04286 expressed protein 27 6.5
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 27 6.5
At3g26590.1 68416.m03319 MATE efflux family protein similar to r... 27 8.7
>At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipid
subunit 3 / V-ATPase 16 kDa proteolipid subunit 3
(AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 199 bits (486), Expect = 9e-52
Identities = 95/147 (64%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = +1
Query: 85 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 264
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 11 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 70
Query: 265 VAVLIAGALQEPA-NYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLF 441
+AV+I+ + A +Y L+ G+ HL +GLA +GL+AG AI IVGDA VR AQQPKLF
Sbjct: 71 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 130
Query: 442 VGMILILIFAEVLGLYGLIVAIYLYTK 522
VGMILILIFAE L LYGLIV I L ++
Sbjct: 131 VGMILILIFAEALALYGLIVGIILSSR 157
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +1
Query: 325 FIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLFVGMILILIFAEVLGLYGLIVA 504
F LGA A+ FS + A + + G +P+L + I+ ++ A VLG+YGLI+A
Sbjct: 13 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIA 72
Query: 505 IYLYTK*TP 531
+ + T P
Sbjct: 73 VIISTGINP 81
>At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipid
subunit 1 / V-ATPase 16 kDa proteolipid subunit 1
(AVAP1) (AVA-P1) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 199 bits (486), Expect = 9e-52
Identities = 95/147 (64%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = +1
Query: 85 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 264
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 11 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 70
Query: 265 VAVLIAGALQEPA-NYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLF 441
+AV+I+ + A +Y L+ G+ HL +GLA +GL+AG AI IVGDA VR AQQPKLF
Sbjct: 71 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 130
Query: 442 VGMILILIFAEVLGLYGLIVAIYLYTK 522
VGMILILIFAE L LYGLIV I L ++
Sbjct: 131 VGMILILIFAEALALYGLIVGIILSSR 157
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +1
Query: 325 FIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLFVGMILILIFAEVLGLYGLIVA 504
F LGA A+ FS + A + + G +P+L + I+ ++ A VLG+YGLI+A
Sbjct: 13 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIA 72
Query: 505 IYLYTK*TP 531
+ + T P
Sbjct: 73 VIISTGINP 81
>At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipid
subunit 5 / V-ATPase 16 kDa proteolipid subunit 5
(AVAP5) identical to SP|P59227 Vacuolar ATP synthase 16
kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16
kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}
GI:926929; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 199 bits (486), Expect = 9e-52
Identities = 95/147 (64%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = +1
Query: 85 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 264
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 11 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 70
Query: 265 VAVLIAGALQEPA-NYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLF 441
+AV+I+ + A +Y L+ G+ HL +GLA +GL+AG AI IVGDA VR AQQPKLF
Sbjct: 71 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 130
Query: 442 VGMILILIFAEVLGLYGLIVAIYLYTK 522
VGMILILIFAE L LYGLIV I L ++
Sbjct: 131 VGMILILIFAEALALYGLIVGIILSSR 157
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +1
Query: 325 FIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLFVGMILILIFAEVLGLYGLIVA 504
F LGA A+ FS + A + + G +P+L + I+ ++ A VLG+YGLI+A
Sbjct: 13 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIA 72
Query: 505 IYLYTK*TP 531
+ + T P
Sbjct: 73 VIISTGINP 81
>At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipid
subunit 4 / V-ATPase 16 kDa proteolipid subunit 4
(AVAP4) (AVA-P4) identical to SP|P59229 Vacuolar ATP
synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 4) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 166
Score = 199 bits (486), Expect = 9e-52
Identities = 95/147 (64%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = +1
Query: 85 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 264
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 13 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 72
Query: 265 VAVLIAGALQEPA-NYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLF 441
+AV+I+ + A +Y L+ G+ HL +GLA +GL+AG AI IVGDA VR AQQPKLF
Sbjct: 73 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 132
Query: 442 VGMILILIFAEVLGLYGLIVAIYLYTK 522
VGMILILIFAE L LYGLIV I L ++
Sbjct: 133 VGMILILIFAEALALYGLIVGIILSSR 159
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +1
Query: 325 FIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLFVGMILILIFAEVLGLYGLIVA 504
F LGA A+ FS + A + + G +P+L + I+ ++ A VLG+YGLI+A
Sbjct: 15 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIA 74
Query: 505 IYLYTK*TP 531
+ + T P
Sbjct: 75 VIISTGINP 83
>At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipid
subunit 2 / V-ATPase 16 kDa proteolipid subunit 2
(AVAP2) (AVA-P2) identical to SP|Q39039 Vacuolar ATP
synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 2 {Arabidopsis
thaliana}, nearly identical to vacuolar H+-ATPase
proteolipid (16 kDa) subunit GI:755147 from [Gossypium
hirsutum]
Length = 165
Score = 199 bits (486), Expect = 9e-52
Identities = 95/147 (64%), Positives = 119/147 (80%), Gaps = 1/147 (0%)
Frame = +1
Query: 85 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLV 264
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL+
Sbjct: 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLI 71
Query: 265 VAVLIAGALQEPA-NYPLYKGFIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLF 441
+AV+I+ + A +Y L+ G+ HL +GLA +GL+AG AI IVGDA VR AQQPKLF
Sbjct: 72 IAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLF 131
Query: 442 VGMILILIFAEVLGLYGLIVAIYLYTK 522
VGMILILIFAE L LYGLIV I L ++
Sbjct: 132 VGMILILIFAEALALYGLIVGIILSSR 158
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +1
Query: 325 FIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQPKLFVGMILILIFAEVLGLYGLIVA 504
F LGA A+ FS + A + + G +P+L + I+ ++ A VLG+YGLI+A
Sbjct: 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIA 73
Query: 505 IYLYTK*TP 531
+ + T P
Sbjct: 74 VIISTGINP 82
>At4g32530.1 68417.m04631 vacuolar ATP synthase, putative /
V-ATPase, putative SP|P23968 Vacuolar ATP synthase 22
kDa proteolipid subunit (EC 3.6.3.14) {Saccharomyces
cerevisiae}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 180
Score = 90.6 bits (215), Expect = 6e-19
Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Frame = +1
Query: 91 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 270
F +G A +I S LGAA+G +G+ + ++ P + K++I V+ +AIYG++VA
Sbjct: 25 FSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIYGVIVA 84
Query: 271 VLIAGALQEPANYPLY------KGFIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQP 432
+++ L+ + +Y G+ +G+ V F+ L G + I+G + AQ
Sbjct: 85 IILQTKLESVPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNS 144
Query: 433 KLFVGMILILIFAEVLGLYGLIVAIYLYTK*TPWNT 540
LFV +++I IF LGL+G+IV I + + T W T
Sbjct: 145 TLFVKILVIEIFGSALGLFGVIVGIIMSAQAT-WPT 179
>At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C
subunit family protein similar to SP|P23968 Vacuolar ATP
synthase 22 kDa proteolipid subunit (EC 3.6.3.14)
{Saccharomyces cerevisiae}; contains Pfam profile
PF00137: ATP synthase subunit C
Length = 178
Score = 90.6 bits (215), Expect = 6e-19
Identities = 49/156 (31%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Frame = +1
Query: 91 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 270
F +G A +I S LGAA+G +G+ + ++ P + K++I V+ +AIYG++VA
Sbjct: 23 FSAIGIAISIGVSVLGAAWGIYITGSSLIGAAIEAPRITSKNLISVIFCEAVAIYGVIVA 82
Query: 271 VLIAGALQEPANYPLY------KGFIHLGAGLAVRFSGLAAGFAISIVGDAXVRGTAQQP 432
+++ L+ + +Y G+ +G+ V F+ L G + I+G + AQ
Sbjct: 83 IILQTKLESVPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNS 142
Query: 433 KLFVGMILILIFAEVLGLYGLIVAIYLYTK*TPWNT 540
LFV +++I IF LGL+G+IV I + + T W T
Sbjct: 143 TLFVKILVIEIFGSALGLFGVIVGIIMSAQAT-WPT 177
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 333 VDEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPHH 187
VD +V G+ G+ LE + + D D ++ HD +D HD HH
Sbjct: 283 VDLDYVLGIGGFDLERIESSVNEDDKGDHHDHDHDHHHDHNHDHDHHHH 331
>At1g61790.1 68414.m06968 OST3/OST6 family protein weak similarity
to SP|Q13454 N33 protein {Homo sapiens}; contains Pfam
profile PF04756: OST3 / OST6 family
Length = 346
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +1
Query: 325 FIHLGAGLAVRFSGLAAGFAISIVG--DAXVRGTAQQPKLFVGMILILIFAEVLGLYGLI 498
F + G+G+ + G A GF ++VG A V + K LI++ A + + +
Sbjct: 264 FFYQGSGMQLGAEGFAVGFLYTVVGLLLAFVTNVLVRVKNITAQRLIMLLALFISFWAVK 323
Query: 499 VAIYLYTK*TPWNTHHF 549
+YL T + H +
Sbjct: 324 KVVYLDNWKTGYGIHPY 340
>At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta
antigen-related contains weak similarity to C protein
immunoglobulin-A-binding beta antigen [Streptococcus
agalactiae] gi|18028989|gb|AAL56250
Length = 731
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -1
Query: 507 DGDDKSVKTQYFSENKNKNHSDE*LRLLSSTTHACISHD-AYGETGSQTRESYSQTSTQV 331
DG+D S +T E +N++ D + + T + S D + + S + S S +S+
Sbjct: 246 DGEDSSSETDE-EEEENQDSEDNNTKD-NVTVESLSSEDPSSSSSSSSSSSSSSSSSSSD 303
Query: 330 DEPFVKGVVG 301
DE +VK VVG
Sbjct: 304 DESYVKEVVG 313
>At2g41190.1 68415.m05087 amino acid transporter family protein low
similarity to vesicular GABA transporter [Rattus
norvegicus] GI:2587061; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 536
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 85 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPV--VMAGIIAIYG 258
PFFG+M A + S L A A I R ++I+ SII V++G + Y
Sbjct: 467 PFFGLMMALIGSLLSILVAIIMPALCFIKIMGNKATRTQMILSSIIVAIGVVSGTLGTYS 526
Query: 259 LVVAVL 276
V ++
Sbjct: 527 SVAKII 532
>At4g36550.1 68417.m05190 U-box domain-containing protein low
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 577
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 413 RTXASPTMLMAKPAARPENLTAKPAPK 333
RT ASPT + P PE + P+PK
Sbjct: 534 RTTASPTSQVVTPVTHPEPVKITPSPK 560
>At3g04570.1 68416.m00485 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 315
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -1
Query: 384 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHD 205
G+ E+ S+Q+ +P + + ++ N H Q VD NN DDR++ D
Sbjct: 8 GQVNLSGLETTPPGSSQLKKPDLHISMNMAMDSGHNNHHHHQEVD-NNNNDDDRDNLSGD 66
Query: 204 QLRP 193
P
Sbjct: 67 DHEP 70
>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
GP:4586626
Length = 1207
Score = 27.9 bits (59), Expect = 5.0
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -1
Query: 471 SENKNKNHSDE*LRLLSSTTHACISHDAYGETGSQTRESYSQTSTQVDEPFVKGVVGWLL 292
+ + S + L + + C S D+ ET + + S + + P +K +L+
Sbjct: 944 NRGNGSDESHDCLEIDPTQFDTCSSDDS-SETSGEKQVDKSVKPSTLHSPVLKN---YLI 999
Query: 291 EGT-SNQDSHDQTVDGNNTRHDDRNDRLH 208
+ T SN DS ++ N +D DRL+
Sbjct: 1000 DATTSNDDSTSASMTQKNPEEEDWKDRLY 1028
>At5g38030.1 68418.m04581 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; putative
multidrug efflux protein NorM - Vibrio parahaemolyticus,
EMBL:AB010463
Length = 498
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 64 ENNPIYGPFFGVMGAASAIIFSALGAAYGTAK-SGTGI---AAMSVMRPELIMKSIIPVV 231
EN+ I G FGVM + + + G A+G K S G+ + ++ ++ S++ +
Sbjct: 88 ENSVIAGFSFGVMLGMGSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTAVILSLLYIF 147
Query: 232 MAGIIAIYGLVVAV 273
A I+A G A+
Sbjct: 148 AAPILAFIGQTPAI 161
>At2g34910.1 68415.m04286 expressed protein
Length = 288
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 476 TSAKIRIRIIPTNNLGC*AVPRTXASPTMLMAK 378
TS + R+R T + C A PRT +P +L A+
Sbjct: 244 TSPQRRVRFSTTTSDSCPASPRTCITPRLLKAR 276
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 114 CYHLQRLGSCLWNCQVRNWYC 176
C++L + + LW+C+ +N YC
Sbjct: 328 CHYLSCIPTSLWSCKSQNVYC 348
>At3g26590.1 68416.m03319 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 500
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +1
Query: 64 ENNPIYGPFFGVMGAASAIIFSALGAAYGTAK-SGTGI---AAMSVMRPELIMKSIIPVV 231
EN+ + G FG+M + + + G A+G K S G+ + ++ ++ S++ +
Sbjct: 88 ENSVVAGFSFGIMLGMGSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTALILSLLYIF 147
Query: 232 MAGIIAIYGLVVAVLIAGAL 291
A I+A G A+ A +
Sbjct: 148 AAPILASIGQTAAISSAAGI 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,767,458
Number of Sequences: 28952
Number of extensions: 301477
Number of successful extensions: 867
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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