Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30070
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    27   1.4  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   1.9  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   1.9  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   1.9  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   3.3  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.4  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   4.4  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 95  CGESQRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSS 208
           C +  + K  + ETP + QGR +   L S  R  KGS+
Sbjct: 386 CDKFMKRKHERIETPLSSQGREISNTL-SRKRGAKGSN 422


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 44  GESDPRNPTASSC*KTRCGESQRGKEAKSETPKAG 148
           GES+  N T++S  K R     + K+AK ET K+G
Sbjct: 297 GESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSG 331


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 387  AVVDVEFGFDVIHQIQDVFDDRLLLCLDHFVH-LFDLNFGLGIDLGR 250
            A VDVE    V   I++ F+DR +L + H ++ + D N  L +D G+
Sbjct: 1389 AAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGK 1435


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 229 MGTREGVAAKIDAETKVKIEEMNKMVQTQKE 321
           M TR+G A  +D   +V  EEM+K++Q  +E
Sbjct: 420 MSTRKGKAVFLDDIMEVAKEEMHKVMQKNEE 450


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 47   ESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQGRRLKM 169
            E+DP+NP A S      G +   +++K+E PK      L++
Sbjct: 1284 ENDPKNPKAGS---QGSGNTSASEDSKTEKPKTRTNNGLQV 1321


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 371 SSGLMSYTRFKTSLMTASFCVWTILFISSILTLVSASILA 252
           SSGL+     K     +S   + +L I S LTLV +S ++
Sbjct: 732 SSGLLELIALKIGNAVSSLNTFRVLLIFSALTLVVSSFIS 771


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 107 QRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSSKNL 217
           QR +   +E+PKA +   L++  K+ D+S+ G +  L
Sbjct: 78  QRAETEANESPKAPRNDYLQVTPKTVDKSLLGPTPQL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,630
Number of Sequences: 5004
Number of extensions: 35256
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)