Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30070
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0321 + 24091997-24092530                                         32   0.27 
01_01_0459 + 3400288-3400729,3400760-3400806,3401055-3401141,340...    27   7.7  

>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 47  ESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSSKNLKPS 226
           E+    P++SS  +    E+   ++ + +   A + RRL+ +   +  S  GS   +  +
Sbjct: 78  ENGQARPSSSSE-QEEAAEAASRRQQQQQAAAAARERRLRRRRSDSRGSCGGSGDGVLLN 136

Query: 227 TWVPGKVLRPRSMPRP 274
            +VPG + R  + PRP
Sbjct: 137 FYVPGLLTRSMTTPRP 152


>01_01_0459 +
           3400288-3400729,3400760-3400806,3401055-3401141,
           3401230-3401561,3401648-3401807,3402155-3402223,
           3403165-3403263
          Length = 411

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 113 GKEAKSETPKAGQGRRLKMKLKSTDR 190
           G+EAK E     QG+RLK+ +   DR
Sbjct: 315 GREAKEELTMLVQGKRLKISVYGNDR 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,285,614
Number of Sequences: 37544
Number of extensions: 210946
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)