Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30070
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    33   0.16 
SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)                      31   0.85 
SB_43805| Best HMM Match : YscO (HMM E-Value=6)                        31   0.85 
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)               30   1.5  
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                30   1.5  
SB_1164| Best HMM Match : Pkinase (HMM E-Value=0.3)                    29   3.4  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             29   3.4  
SB_57623| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-30)                 29   3.4  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  27   7.9  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_32949| Best HMM Match : SAP (HMM E-Value=1)                         27   7.9  

>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 104 SQRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMPRPK 277
           S RGK  + E  +A   R         DRS+K S  +   +   P K ++P SMP  K
Sbjct: 270 SMRGKPTEDEKTEAPHPRERSFSRTRLDRSMKNSKPDKPATPDKPDKRVKPVSMPESK 327


>SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +1

Query: 238 REGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 390
           ++  AAK +   +++IE +NK ++  KE +  D   + Y ++ E + N+ L
Sbjct: 3   KKAKAAKREELKEMRIEMVNKAIEESKEFITPDDEKIAYALENETNYNFAL 53


>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
          Length = 315

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +1

Query: 226 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 390
           H   ++  AAK + E K ++IE +NK ++  KE +  D L+  + Y ++ E + N+ L
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193


>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
          Length = 243

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +1

Query: 226 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 390
           H   ++  AAK + E K ++IE +NK ++  KE +  D L+  + Y ++ E + N+ L
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193


>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
          Length = 1508

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 47   ESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSSKNL 217
            ES  R P  ++  K+  G+  RGK+ + ++PK  + +    K     RS KG  K +
Sbjct: 1000 ESSERTPRKTTE-KSPSGKGVRGKDERKDSPKEARKKTSPEKRSQGARSSKGDEKRV 1055


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 47  ESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSSKNL 217
           ES  R P  ++  K+  G+  RGK+ + ++PK  + +    K     RS KG  K +
Sbjct: 359 ESSERTPRKTTE-KSPSGKGVRGKDERKDSPKEARKKTSPEKRSQGARSSKGDEKRV 414


>SB_1164| Best HMM Match : Pkinase (HMM E-Value=0.3)
          Length = 620

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 89  TRCGESQRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSSKNLKPS 226
           T+C ++   K  KS TP  GQG  ++ + K   +S+K +  + +PS
Sbjct: 362 TKCRQAGFTKRTKSSTP--GQGTSMQGQFKMITKSLKVTPSSKQPS 405


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 424 LRLTNLI*SLLFKKINCILI*QIIVTSVCSLQVFLEPTYLKK 549
           +R+TN    L F  +  +++   IV+S+CSL + L+PT+  +
Sbjct: 406 MRVTNTAALLFF--LPALIVGNFIVSSLCSLILLLKPTFFHR 445


>SB_57623| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-30)
          Length = 337

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 261 DLGRNTFPGTHVLGFKFFELPFTLL 187
           D GR   P    +GF FF LPF+L+
Sbjct: 174 DGGRTPIPTAFAIGFLFFLLPFSLM 198


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 197 KGSSKNLKPSTWVPGKVLRPRSMPR 271
           + +SKNL P  W PG VL+   + R
Sbjct: 661 RDTSKNLDPKRWGPGPVLKAEEVDR 685


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 144  ALGVSLFASLPR*LSPQRVFQQLEAVGFLGSDSPYRKHTKTM*TKTE 4
            ALG+     + + ++ + V +++  + F+ + +PYRKHT  M  K E
Sbjct: 2447 ALGLIKEVMVDKRVNGRPVGEEIRRLHFIAACNPYRKHTDQMIHKLE 2493


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 241  EGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKP 366
            E    K DA T  ++E+++K+++ + E +IK+     YD+KP
Sbjct: 1737 EKAIIKHDATT-AELEKIDKLLRGKIEQLIKEHTKKKYDVKP 1777


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 253  AKIDAETKVKIEEMNKMVQTQKEAVIKD 336
            AK+D E K K   +NKM   ++E +I D
Sbjct: 2455 AKLDGEFKGKYYPLNKMTDEEQEQLIND 2482


>SB_32949| Best HMM Match : SAP (HMM E-Value=1)
          Length = 269

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 74  SSC*KTRCGESQRGKEAKSETPKAGQGRRLKMKLKSTD 187
           SSC KT       GK     TP    GR+ K ++  +D
Sbjct: 62  SSCAKTPSSHPSTGKRKSRTTPSVTPGRKRKRRIIDSD 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,614
Number of Sequences: 59808
Number of extensions: 242978
Number of successful extensions: 634
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)