Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30070
         (560 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    27   0.56 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    26   0.97 
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             24   3.9  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 26.6 bits (56), Expect = 0.56
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 32  CFRYGESDPRNPTASSC*KTRCGESQRGKEAKS 130
           CFR  +S PR  ++SS   T+ G +  G  A S
Sbjct: 439 CFRRADSAPRGSSSSSSSATKAGAAGAGGTAGS 471


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.8 bits (54), Expect = 0.97
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +1

Query: 268 ETKVKIEEMNKMVQTQKEAVIK 333
           +TK +IEE+NK ++T ++ +++
Sbjct: 738 QTKEEIEELNKKIETLQKTIVE 759


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 357  HQTRTPHQLPLKLSKI 404
            H+TR PH LP + S++
Sbjct: 990  HKTRVPHILPYESSRV 1005


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,211
Number of Sequences: 2352
Number of extensions: 8532
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)