Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30070
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50160.1 68418.m06212 ferric reductase-like transmembrane com...    30   1.2  
At1g74160.1 68414.m08589 expressed protein                             29   1.6  
At4g04390.1 68417.m00627 Ulp1 protease family protein contains P...    29   2.8  
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    28   4.9  
At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low s...    27   6.5  
At3g49330.1 68416.m05393 invertase/pectin methylesterase inhibit...    27   6.5  
At1g44810.1 68414.m05133 expressed protein  contains Pfam profil...    27   8.6  
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    27   8.6  

>At5g50160.1 68418.m06212 ferric reductase-like transmembrane
           component family protein contains Pfam profile PF01794:
           Ferric reductase like transmembrane component
          Length = 728

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 261 DLGRNTFPGTHVLGFKFFELPFTLLSVLFNFILSLLP 151
           D  R+TF G + L F  F  P   LS++    LSLLP
Sbjct: 42  DTARHTFFGYYGLNFAVFSFPPIALSIVGLIYLSLLP 78


>At1g74160.1 68414.m08589 expressed protein
          Length = 1030

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +2

Query: 47  ESDPRNPTASSC*KTRCGESQRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSSKNLKPS 226
           +SD RN  +SS    +  +    K + S +P+  Q ++L+   +S   +   SSK+ KPS
Sbjct: 559 KSDSRNVRSSSKKPQQVSKESASKSSGSVSPRLQQ-KKLEYDKRSRPPTPPDSSKSRKPS 617

Query: 227 TWVPGKVLRPRSMPRPK 277
                +   P    RPK
Sbjct: 618 NQQLVESTSPGGRRRPK 634


>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 963

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 28  CVFSIWRVRPKESNSF*LLKNALRRKSARQGSEKRNA 138
           CV S   V PK+     +LK    RKSA+QG  K+N+
Sbjct: 340 CVPSEVVVAPKKRKKSAMLKGGRGRKSAKQGRFKKNS 376


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 250 AAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYD---IKPELH 375
           AA++    + K+  MNK++  + + + K V NLVY+   +K +LH
Sbjct: 87  AARLQTVNR-KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130


>At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low
           similarity to nuclear protein np95 [Mus musculus]
           GI:4220590; contains Pfam profile PF02182: YDG/SRA
           domain
          Length = 328

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +1

Query: 148 PREEAQDEVXXXXXXXXXXXXXXXAKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAV 327
           PRE+  + +               A+  G      ++ID +T   +E+M K V T+K   
Sbjct: 117 PREKVLEVLSLFKQVYNQLDRDKKARRGGDFLDATSRIDLKTLTVLEKMGKQVNTEKRIG 176

Query: 328 IKDVLNL--VYDIKPELHI 378
               +N+  V+  K EL +
Sbjct: 177 SVPGINIGDVFQYKTELRV 195


>At3g49330.1 68416.m05393 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 186

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 503 LVTMICQINIQFIFLNKSDQIKLVRRKLCIK 411
           L+  IC+  I F F N++   +LVRR+  IK
Sbjct: 31  LINRICKQTIDFKFCNQTITSQLVRRQTSIK 61


>At1g44810.1 68414.m05133 expressed protein  contains Pfam profile:
           PF04504 protein of unknown function, DUF573
          Length = 296

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +1

Query: 253 AKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDI 360
           +K+  ETK +IEE  KMV+ ++  ++   ++++ ++
Sbjct: 253 SKVSKETKKRIEEKMKMVEAKELELLSQKIDVLKEV 288


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 104 SQRGKEAKSETPKAGQGRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVL 250
           S+    ++S +PKA   RR   K  S     +  S++  P  W+  + L
Sbjct: 225 SRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRWITVETL 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,199,969
Number of Sequences: 28952
Number of extensions: 178232
Number of successful extensions: 513
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)