Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30069
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 155 4e-39
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 37 0.003
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.19
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 3.1
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 4.2
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 7.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.3
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 25 7.3
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 7.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.6
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.6
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 25 9.6
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 155 bits (377), Expect = 4e-39
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
Frame = +3
Query: 75 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELR 254
+L ++++ +D+ KD + L AV+IPSVS DV R + M ++ + ++GA E R
Sbjct: 2 SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKR 61
Query: 255 DVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VERN 431
D+G+ +DG+DV NDP K TV IY H DVQPA DGW T+PF L V+
Sbjct: 62 DIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNK 121
Query: 432 EKLYGRGSTDDKGPVLGWLHTINAYKALVLSCLSILKFIFECMEESGSEGL 584
+++GRG+TDDKGP++GW+ I A+K L + L FE MEE GSEGL
Sbjct: 122 GRMFGRGATDDKGPLIGWISAIEAHKELGIDFPVNLLMCFEGMEEYGSEGL 172
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 351 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTI 497
+ GH DV P ++ D W PF N +Y RG+ DDK V+ L +
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAILEAL 244
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.19
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = -1
Query: 487 SQPSTGPLSSVEPLPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFFGSLPNTPT 308
S T S +P S S++S S S A +S I + S ++PT
Sbjct: 227 SSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSI--ISSSSSSSSSPT 284
Query: 307 KTGGS*TSLPSIV*KPTSLNSVVAPTSFNLSCIQ*TI---RMQSARYFTSHETDGMATAS 137
T + +S S PTS +S ++ +S + S T+ M S+ F+S T +T S
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 462 DKGPVLGWLHTINAYKALVLSCLSILKFIFECMEESGSEGLTAY*WTN*NLRD 620
D+ P W+ +NAY + SC S ++ +E ES ++G +Y +T ++ D
Sbjct: 43 DETPSFKWV--LNAYHERLRSCTSCIQAYYELRNESLAKG--SYSFTGFSITD 91
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 378 QVVHPNDHRYKLYFFLDHYPIR 313
++V P D + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 367 MYNLH*NLMDGRLNLLN*LSAMKNYMEEVLLM 462
+YN + N RLN A+KNYMEE+ L+
Sbjct: 435 LYNFNGNANPSRLN-----PALKNYMEELKLL 461
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 435 FHCAQLVQKVQSPIHQISMQVVHPNDHR 352
FH + + + IH+I +Q VH DH+
Sbjct: 796 FHWSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 448 LPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFF 332
L Y L ST+ + S+S S FN + + I+T+ FF
Sbjct: 406 LRYTNDLASTNKRFSLSEASSFNVWSSVRKRAIETIEFF 444
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 330 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 440
P + I DV+P LKS + P E R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 532 DRQLSTSAL*ALMVCSQPSTGPLSSVEPLPYNFSLRST 419
+R S++ L + + S S PL S+EP P N +L ++
Sbjct: 805 ERNASSNLLNSSLFSSFNSVNPLISLEPNPLNRTLNNS 842
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 393 HQISMQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERLCHLLFESQHPL 250
H+I+M +V ++ F + R + L +E L +F+S HPL
Sbjct: 381 HEINMLLVDLLLEPLQVAFVYKNLARRWISLEEIENLWLKVFDSSHPL 428
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +3
Query: 474 VLGWLHTINAYKALVL----SCLSILKFIFECMEESG 572
VLG H++ A A V SCL I KFI+ +++G
Sbjct: 82 VLGIGHSLEAGLAQVTFGVGSCLGITKFIYSIFKQTG 118
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 404 SLPSIRFQCRLYIQMTIDTNCIFFW 330
SLPS+R C+LY ++I + F W
Sbjct: 4083 SLPSVRLACQLY-GVSIQSLVFFTW 4106
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 342 YFFLDHYPIRLLKLAAVERLCHLLFESQHPLTL 244
Y F DH P LL L A+ LF++Q LTL
Sbjct: 93 YGFQDHNPPPLLFLWAIVMNMDALFQTQPLLTL 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,857
Number of Sequences: 5004
Number of extensions: 63147
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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