Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30069
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)                       41   0.001
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)         35   0.051
SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)                   33   0.20 
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)                       29   3.3  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               29   4.4  

>SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)
          Length = 75

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 336 KNTVCIYGHLDVQPALKSDGWET--EPFELVERNEKLYGRGSTDDKGPVLGWLHTINAYK 509
           ++TV +YGHLD QP  +  GW     P+     + KLYGRG  DD   V   L  I A +
Sbjct: 15  RDTVLLYGHLDKQP--EFSGWRAGLGPWTPKYEDGKLYGRGGADDGYAVYASLTAIMALE 72

Query: 510 ALV 518
            ++
Sbjct: 73  GIL 75


>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
          Length = 702

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +3

Query: 351 IYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTINA 503
           I  HLDV PA  S  W+  PF+   ++  ++GRG+ D K  V+  L  + A
Sbjct: 464 IASHLDVVPAPGS--WDVPPFDGRVKDGYIWGRGTLDVKNGVMASLEAVQA 512


>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
          Length = 233

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
 Frame = +3

Query: 87  IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDK--------------L 224
           IF +V  +++ Y + L +AVAI SVS   + R +  +MV+ + +K              L
Sbjct: 36  IFVFV-YSQELYIKRLADAVAIKSVSAWPETRGEITKMVNHVAEKIRCKIYKVYRVLMEL 94

Query: 225 KEVGATTELRDVGFQTI-DGKDVQXXXXXXXXXXNDPKKNTVCIY 356
           K++G   EL DVG +T+ DG  +           ++P K T   Y
Sbjct: 95  KKLGTEVELVDVGTETLPDGSTLPLPPVLLGILGSNPAKKTPVDY 139


>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
          Length = 361

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 30  SVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 170
           S SSK VS++ AT  TLPE+ + +D   D+  + +  A+ I S   D
Sbjct: 18  SRSSKDVSSRRATTVTLPEL-RAMDDLADAADRRVAHALPIASSESD 63


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/66 (34%), Positives = 36/66 (54%)
 Frame = -1

Query: 586 VKPSEPDSSIHSKMNFKIDRQLSTSAL*ALMVCSQPSTGPLSSVEPLPYNFSLRSTSSKG 407
           V PS   S I S+ + K+    STSA  +++V + PST P+    P  +  SL + +S  
Sbjct: 194 VAPSVVASPISSEPSVKLG---STSAASSVVVAATPSTSPV----PATFVPSLPTVASAS 246

Query: 406 SVSHPS 389
           ++S PS
Sbjct: 247 TLSAPS 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,017,456
Number of Sequences: 59808
Number of extensions: 439769
Number of successful extensions: 964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)