Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30069
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.36 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = +3

Query: 99  VDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKL 224
           VD+ K   ++L  +   +  + CD+  + D ++++ W++  L
Sbjct: 41  VDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNL 82


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 5  FSCLSSTLFSEFQTSFCK 58
          F CL+ST+ SE   + CK
Sbjct: 15 FLCLASTILSESAGTSCK 32


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 432 EKLYGRGSTDDKGPVLGWLHTINAYKALVLS 524
           E L G GST    P L    T+N  + ++L+
Sbjct: 16  ENLKGGGSTTPASPTLSTPPTLNLMEQILLA 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,078
Number of Sequences: 438
Number of extensions: 3760
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)