Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30068
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    29   0.75 
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.75 
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    27   1.7  
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    27   3.0  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   3.0  
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    27   3.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   4.0  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   9.2  

>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 505 YDVFFSIFLCSYLTIEVAHDNFIFVSAFHSTL 410
           + VFF IFLC  L    +   F+ +  FHS +
Sbjct: 372 FPVFFPIFLCYTLNASFSTIQFVALGVFHSKI 403


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 212 VGFMVRKNLADNIEELRGISERIAILNIKLSIKGKNEEWS--IIQAYSPTESDKKEDVIK 385
           +G +  KN A N   +  I   +A  N  L+ +   EEW+  +    +  +     D+++
Sbjct: 136 IGLLKSKNTASNNYSVDHIVSNLANDNTLLNRQVSTEEWNSHLRHLLNIPKCFLGVDIVE 195

Query: 386 IENFYNDLQSTMES 427
           I NF+N L  T+ S
Sbjct: 196 IVNFFNYLPQTVIS 209


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 184 YRRDAWTIWSWIHGKEKSCRQYRRAQRNLRTYCNP*YQTIY 306
           ++RD W+IW W   + K+ R YR   R+L+ +    Y+T+Y
Sbjct: 61  WKRDLWSIW-WSLSR-KATRFYRWLSRSLK-WRPVTYETVY 98


>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 62  SEKLKEFELAVKEIKWDIIGISEMRRFGEGIQDRGNYILHYIGETPGLYGVGFMV 226
           +E++ E  L VKE +      S    FG GIQ+  +  + Y   + G+YG+ F V
Sbjct: 76  AEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKY-DPSIGIYGMDFYV 129


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 86  LAVKEIKWDIIGISEMRRFGEGIQDRGNYILHYIGETPGLYGVGFMVR 229
           L+ KEI  DI  I+ +    E I+D+  YI   I +T G    GF  R
Sbjct: 283 LSKKEISDDIAQITSVTPITEKIEDKDKYISEVI-DTYGKLADGFEYR 329


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 62  SEKLKEFELAVKEIKWDIIGISEMRRFGEGIQDRGNYILHYIGETPGLYGVGFMV 226
           +E++ E  L VKE +      S    FG GIQ+  +  + Y   + G+YG+ F V
Sbjct: 76  AEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKY-DPSIGIYGMDFYV 129


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 553 TNPCAVFTSEAKSISSYDVFFSIFLCS--YLT-IEVAHDNFIFVSAFHSTLK 407
           +NPC VF+     I +YD    + + S  ++T ++     FI +S+F +  K
Sbjct: 669 SNPCTVFSIALNQIETYDNLVEVVVDSARFITALDFDALTFIILSSFSNEFK 720


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 577 NLFSVAKFTNPCAVFTSEAKSISSY 503
           N+F  A+ ++PC +F  E  SI+ +
Sbjct: 738 NVFEKARNSSPCVIFFDELDSIAPH 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,413
Number of Sequences: 5004
Number of extensions: 55953
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)